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3ZFK
Asym. Unit
Info
Asym.Unit (93 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (45 KB)
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(1)
Title
:
N-TERMINAL TRUNCATED NUCLEASE DOMAIN OF COLICIN E7
Authors
:
E. Toth, A. Czene, B. Gyurcsik, H. Otten, J. -C. N. Poulsen, S. Larsen, H. E. M. Christensen, K. Nagata
Date
:
11 Dec 12 (Deposition) - 18 Dec 13 (Release) - 24 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Artificial Metallonuclease, Allosteric Control
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Czene, E. Toth, E. Nemeth, H. Otten, J. N. Poulsen, H. E. M. Christensen, L. Rulisek, K. Nagata, S. Larsen, B. Gyurcsik
A New Insight Into The Zinc-Dependent Dna-Cleavage By The Colicin E7 Nuclease: A Crystallographic And Computational Study.
Metallomics V. 6 2090 2014
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
CL
2
Ligand/Ion
CHLORIDE ION
3
SO4
9
Ligand/Ion
SULFATE ION
4
ZN
2
Ligand/Ion
ZINC ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:544 , HIS A:569 , HIS A:573 , SO4 A:1136
BINDING SITE FOR RESIDUE ZN A 401
02
AC2
SOFTWARE
HIS B:544 , HIS B:569 , HIS B:573 , SO4 B:1134
BINDING SITE FOR RESIDUE ZN B 401
03
AC3
SOFTWARE
GLY A:455 , HOH A:2010 , HOH A:2011 , HOH A:2085
BINDING SITE FOR RESIDUE CL A1133
04
AC4
SOFTWARE
GLY B:455 , HOH B:2009 , HOH B:2010 , HOH B:2077
BINDING SITE FOR RESIDUE CL B1133
05
AC5
SOFTWARE
ARG A:530 , THR A:531 , GLN A:532 , HOH A:2061 , HOH A:2089 , ARG B:530 , THR B:531
BINDING SITE FOR RESIDUE SO4 A1134
06
AC6
SOFTWARE
GLY A:451 , GLY A:554 , VAL A:555 , TYR A:556 , HOH A:2005 , HOH A:2092 , ASN B:552
BINDING SITE FOR RESIDUE SO4 A1135
07
AC7
SOFTWARE
ZN B:401 , LEU B:543 , HIS B:544 , HIS B:545 , HIS B:569 , HIS B:573 , HOH B:2067
BINDING SITE FOR RESIDUE SO4 B1134
08
AC8
SOFTWARE
ZN A:401 , LEU A:543 , HIS A:544 , HIS A:545 , HIS A:569 , HOH A:2070 , HOH A:2076
BINDING SITE FOR RESIDUE SO4 A1136
09
AC9
SOFTWARE
HOH A:2080 , GLY B:554 , VAL B:555 , TYR B:556 , HOH B:2006 , HOH B:2008 , HOH B:2072
BINDING SITE FOR RESIDUE SO4 B1135
10
BC1
SOFTWARE
GLN A:532 , SER B:514 , ASN B:516 , HOH B:2051 , HOH B:2052
BINDING SITE FOR RESIDUE SO4 B1136
11
BC2
SOFTWARE
ARG A:496 , GLU A:542 , LEU A:543 , HOH A:2041 , HOH A:2045 , HOH A:2093
BINDING SITE FOR RESIDUE SO4 A1137
12
BC3
SOFTWARE
ARG B:496 , GLU B:542 , LEU B:543 , HOH B:2037 , HOH B:2041 , HOH B:2063
BINDING SITE FOR RESIDUE SO4 B1137
13
BC4
SOFTWARE
SER A:514 , HOH A:2051 , HOH A:2055
BINDING SITE FOR RESIDUE SO4 A1138
14
BC5
SOFTWARE
ARG B:496 , LYS B:497 , LYS B:525 , HOH B:2055 , HOH B:2056
BINDING SITE FOR RESIDUE ACT B1138
15
BC6
SOFTWARE
ILE B:549 , SER B:550 , HOH B:2067
BINDING SITE FOR RESIDUE ACT B1139
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3zfka_ (A:)
1b: SCOP_d3zfkb_ (B:)
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Protein Domains
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
His-Me finger endonucleases
(64)
Superfamily
:
His-Me finger endonucleases
(64)
Family
:
HNH-motif
(35)
Protein domain
:
automated matches
(10)
Escherichia coli [TaxId: 469008]
(1)
1a
d3zfka_
A:
1b
d3zfkb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (93 KB)
Header - Asym.Unit
Biol.Unit 1 (45 KB)
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