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3ZFE
Biol. Unit 1
Info
Asym.Unit (137 KB)
Biol.Unit 1, α-C (7.1 MB)
Biol.Unit 1 (7.1 MB)
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(1)
Title
:
HUMAN ENTEROVIRUS 71 IN COMPLEX WITH CAPSID BINDING INHIBITOR WIN51711
Authors
:
P. Plevka, R. Perera, M. L. Yap, J. Cardosa, R. J. Kuhn, M. G. Rossmann
Date
:
11 Dec 12 (Deposition) - 27 Mar 13 (Release) - 10 Apr 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (60x)
Keywords
:
Ev71, Virus, Picornavirus
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
P. Plevka, R. Perera, M. L. Yap, J. Cardosa, R. J. Kuhn, M. G. Rossmann
Structure Of Human Enterovirus 71 In Complex With A Capsid- Binding Inhibitor.
Proc. Natl. Acad. Sci. Usa V. 110 5463 2013
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Hetero Components
(1, 60)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
2e: SODIUM ION (NAe)
2f: SODIUM ION (NAf)
3a: SPHINGOSINE (SPHa)
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
NA
-1
Ligand/Ion
SODIUM ION
3
SPH
60
Ligand/Ion
SPHINGOSINE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:111 , ASP A:112 , PHE A:135 , TYR A:153 , PHE A:155 , VAL A:179 , VAL A:192 , TRP A:203 , ASN A:228
BINDING SITE FOR RESIDUE SPH A 301
2
AC2
SOFTWARE
SER A:15 , SER A:17 , SER B:40 , TYR B:41
BINDING SITE FOR RESIDUE NA B1255
3
AC3
SOFTWARE
THR A:28 , GLY A:29 , ASN A:31 , ASN A:71
BINDING SITE FOR RESIDUE NA A1298
4
AC4
SOFTWARE
SER A:56 , GLU C:116 , GLN C:221
BINDING SITE FOR RESIDUE NA A1299
5
AC5
SOFTWARE
VAL A:44 , PRO A:45 , LEU A:47 , GLN A:48 , GLU D:63 , ALA D:65
BINDING SITE FOR RESIDUE NA A1300
6
AC6
SOFTWARE
GLU A:164 , SER A:168
BINDING SITE FOR RESIDUE NA A1301
7
AC7
SOFTWARE
GLN A:189 , VAL C:20 , SER C:21
BINDING SITE FOR RESIDUE NA C1243
8
AC8
SOFTWARE
PRO C:90 , GLY C:91 , TRP C:111 , ALA C:181
BINDING SITE FOR RESIDUE CL C1244
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3zfea_ (A:)
2a: SCOP_d3zfec_ (C:)
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Positive stranded ssRNA viruses
(163)
Family
:
automated matches
(17)
Protein domain
:
automated matches
(17)
Human enterovirus 71 [TaxId: 39054]
(11)
1a
d3zfea_
A:
Family
:
Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
(103)
Protein domain
:
automated matches
(18)
Human enterovirus 71 [TaxId: 39054]
(9)
2a
d3zfec_
C:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
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Chain D
Asymmetric Unit 1
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Asymmetric Unit 8
Asymmetric Unit 9
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Asymmetric Unit 42
Asymmetric Unit 43
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Asymmetric Unit 46
Asymmetric Unit 47
Asymmetric Unit 48
Asymmetric Unit 49
Asymmetric Unit 50
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Asymmetric Unit 56
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Asymmetric Unit 60
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Asym.Unit (137 KB)
Header - Asym.Unit
Biol.Unit 1 (7.1 MB)
Header - Biol.Unit 1
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