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3ZEU
Biol. Unit 1
Info
Asym.Unit (207 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (102 KB)
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(1)
Title
:
STRUCTURE OF A SALMONELLA TYPHIMURIUM YGJD-YEAZ HETERODIMER BOUND TO ATPGAMMAS
Authors
:
C. E. Nichols, H. K. Lamb, P. Thompson, K. El Omari, M. Lockyer, I. Charl A. R. Hawkins, D. K. Stammers
Date
:
07 Dec 12 (Deposition) - 20 Mar 13 (Release) - 29 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: D,E (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Hydrolase, Nucleotide Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
C. E. Nichols, H. K. Lamb, P. Thompson, K. E. Omari, M. Lockyer, I. Charles, A. R. Hawkins, D. K. Stammers
Crystal Structure Of The Dimer Of Two Essential Salmonella Typhimurium Proteins, Ygjd & Yeaz And Calorimetric Evidence For The Formation Of A Ternary Ygjd-Yeaz-Yjee Complex.
Protein Sci. V. 22 628 2013
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSa)
2b: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSb)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
5a: SELENOMETHIONINE (MSEa)
5b: SELENOMETHIONINE (MSEb)
5c: SELENOMETHIONINE (MSEc)
5d: SELENOMETHIONINE (MSEd)
5e: SELENOMETHIONINE (MSEe)
5f: SELENOMETHIONINE (MSEf)
5g: SELENOMETHIONINE (MSEg)
5h: SELENOMETHIONINE (MSEh)
5i: SELENOMETHIONINE (MSEi)
5j: SELENOMETHIONINE (MSEj)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
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Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
AGS
1
Ligand/Ion
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
MG
-1
Ligand/Ion
MAGNESIUM ION
5
MSE
5
Mod. Amino Acid
SELENOMETHIONINE
6
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(5, 5)
Info
All Sites
1: AC7 (SOFTWARE)
2: AC8 (SOFTWARE)
3: AC9 (SOFTWARE)
4: BC1 (SOFTWARE)
5: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC7
SOFTWARE
TRP D:224 , PRO E:44 , GLU E:45
BINDING SITE FOR RESIDUE CL E 1338
2
AC8
SOFTWARE
HIS E:111 , HIS E:115 , ASP E:300 , AGS E:1341
BINDING SITE FOR RESIDUE ZN E 1339
3
AC9
SOFTWARE
ASP E:11 , GLU E:12 , HOH E:2014 , HOH E:2015 , HOH E:2016 , HOH E:2019
BINDING SITE FOR RESIDUE MG E 1340
4
BC1
SOFTWARE
HIS E:111 , MET E:112 , HIS E:115 , SER E:136 , GLY E:137 , GLY E:138 , HIS E:139 , GLY E:163 , PHE E:166 , ASP E:167 , GLY E:180 , PRO E:181 , GLY E:268 , VAL E:269 , ASN E:272 , THR E:299 , ASP E:300 , ZN E:1339 , HOH E:2006 , HOH E:2008 , HOH E:2014 , HOH E:2019 , HOH E:2098 , HOH E:2125 , HOH E:2162 , HOH E:2246 , HOH E:2247 , HOH E:2248
BINDING SITE FOR RESIDUE AGS E 1341
5
BC3
SOFTWARE
HOH A:2170 , HOH E:2137 , HOH E:2138 , HOH E:2249
BINDING SITE FOR RESIDUE MG E 1380
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3zeua1 (A:1-107)
1b: SCOP_d3zeua2 (A:108-230)
1c: SCOP_d3zeud1 (D:1-107)
1d: SCOP_d3zeud2 (D:108-230)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
automated matches
(111)
Protein domain
:
automated matches
(111)
Salmonella enterica [TaxId: 909946]
(2)
1a
d3zeua1
A:1-107
1b
d3zeua2
A:108-230
1c
d3zeud1
D:1-107
1d
d3zeud2
D:108-230
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain D
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (207 KB)
Header - Asym.Unit
Biol.Unit 1 (102 KB)
Header - Biol.Unit 1
Biol.Unit 2 (102 KB)
Header - Biol.Unit 2
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