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3ZDV
Asym. Unit
Info
Asym.Unit (169 KB)
Biol.Unit 1 (162 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE LECB LECTIN FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH METHYL 6-(2,4,6-TRIMETHYLPHENYLSULFONYLAMIDO)-6-DEOXY-ALPHA-D-MANNOPYRANOSIDE
Authors
:
D. Hauck, I. Joachim, B. Frommeyer, A. Varrot, B. Philipp, H. M. Moller, A. Imberty, T. E. Exner, A. Titz
Date
:
30 Nov 12 (Deposition) - 18 Sep 13 (Release) - 13 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.41
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Sugar Binding Protein, Glycomimetic, Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Hauck, I. Joachim, B. Frommeyer, A. Varrot, B. Philipp, H. M. Moller A. Imberty, T. E. Exner, A. Titz
Discovery Of Two Classes Of Potent Glycomimetic Inhibitors Of Pseudomonas Aeruginosa Lecb With Distinct Binding Modes.
Acs Chem. Biol. V. 8 1775 2013
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Hetero Components
(6, 19)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: 1,2-ETHANEDIOL (EDOa)
3a: 2,4,6-TRIMETHYLBENZENESULFONAMIDE (F1Aa)
3b: 2,4,6-TRIMETHYLBENZENESULFONAMIDE (F1Ab)
3c: 2,4,6-TRIMETHYLBENZENESULFONAMIDE (F1Ac)
3d: 2,4,6-TRIMETHYLBENZENESULFONAMIDE (F1Ad)
4a: GLYCEROL (GOLa)
5a: O1-METHYL-MANNOSE (MMAa)
5b: O1-METHYL-MANNOSE (MMAb)
5c: O1-METHYL-MANNOSE (MMAc)
5d: O1-METHYL-MANNOSE (MMAd)
6a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
8
Ligand/Ion
CALCIUM ION
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
F1A
4
Ligand/Ion
2,4,6-TRIMETHYLBENZENESULFONAMIDE
4
GOL
1
Ligand/Ion
GLYCEROL
5
MMA
4
Ligand/Ion
O1-METHYL-MANNOSE
6
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:95 , ASP A:99 , ASP A:101 , ASP A:104 , MMA A:201
BINDING SITE FOR RESIDUE CA A 199
02
AC2
SOFTWARE
ASN A:21 , ASP A:101 , ASN A:103 , ASP A:104 , MMA A:201 , GLY B:114
BINDING SITE FOR RESIDUE CA A 200
03
AC3
SOFTWARE
GLU B:95 , ASP B:99 , ASP B:101 , ASP B:104 , MMA B:201
BINDING SITE FOR RESIDUE CA B 199
04
AC4
SOFTWARE
GLY A:114 , ASN B:21 , ASP B:101 , ASN B:103 , ASP B:104 , MMA B:201
BINDING SITE FOR RESIDUE CA B 200
05
AC5
SOFTWARE
GLU C:95 , ASP C:99 , ASP C:101 , ASP C:104 , MMA C:201
BINDING SITE FOR RESIDUE CA C 199
06
AC6
SOFTWARE
ASN C:21 , ASP C:101 , ASN C:103 , ASP C:104 , MMA C:201 , GLY D:114
BINDING SITE FOR RESIDUE CA C 200
07
AC7
SOFTWARE
GLU D:95 , ASP D:99 , ASP D:101 , ASP D:104 , MMA D:201
BINDING SITE FOR RESIDUE CA D 199
08
AC8
SOFTWARE
GLY C:114 , ASN D:21 , ASP D:101 , ASN D:103 , ASP D:104 , MMA D:201
BINDING SITE FOR RESIDUE CA D 200
09
AC9
SOFTWARE
GLN B:53 , VAL B:54 , HOH B:2057 , HOH B:2069 , HOH B:2116 , ALA D:38 , THR D:39 , GLN D:53
BINDING SITE FOR RESIDUE GOL B 203
10
BC1
SOFTWARE
SER B:44 , ASN B:46 , ALA B:48 , HOH B:2065 , SER D:44 , THR D:45 , ASN D:46 , HOH D:2050 , HOH D:2053 , HOH D:2092
BINDING SITE FOR RESIDUE SO4 D 204
11
BC2
SOFTWARE
ALA B:1 , HOH B:2117 , HOH B:2118 , ALA D:1
BINDING SITE FOR RESIDUE EDO B1115
12
BC3
SOFTWARE
ARG A:13 , ASN A:21 , SER A:22 , SER A:23 , GLU A:95 , ASP A:96 , ASP A:99 , ASP A:101 , ASP A:104 , GLY A:114 , CA A:199 , CA A:200 , HOH A:2127 , HOH A:2134 , SER B:23 , THR B:45 , GLY B:114 , MMA B:201
BINDING SITE FOR RESIDUES MMA A 201 AND F1A A 202
13
BC4
SOFTWARE
GLY A:114 , F1A A:202 , ASN B:21 , SER B:22 , SER B:23 , GLY B:24 , GLU B:95 , ASP B:96 , ASP B:99 , ASP B:101 , ASP B:104 , CA B:199 , CA B:200 , HOH B:2105
BINDING SITE FOR RESIDUES MMA B 201 AND F1A B 202
14
BC5
SOFTWARE
ASN C:21 , SER C:22 , SER C:23 , GLU C:95 , ASP C:96 , ASP C:99 , ASP C:101 , ASP C:104 , CA C:199 , CA C:200 , HOH C:2100 , HOH C:2109 , ASN D:70 , GLY D:114 , F1A D:202 , HOH D:2084
BINDING SITE FOR RESIDUES MMA C 201 AND F1A C 202
15
BC6
SOFTWARE
ARG C:72 , GLY C:114 , F1A C:202 , ASN D:21 , SER D:22 , SER D:23 , GLU D:95 , ASP D:96 , ASP D:99 , ASP D:101 , ASP D:104 , CA D:199 , CA D:200 , HOH D:2086 , HOH D:2091
BINDING SITE FOR RESIDUES MMA D 201 AND F1A D 202
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3zdva_ (A:)
1b: SCOP_d3zdvb_ (B:)
1c: SCOP_d3zdvc_ (C:)
1d: SCOP_d3zdvd_ (D:)
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Class
:
All beta proteins
(24004)
Fold
:
Calcium-mediated lectin
(32)
Superfamily
:
Calcium-mediated lectin
(32)
Family
:
Calcium-mediated lectin
(25)
Protein domain
:
Fucose-binding lectin II (PA-LII)
(9)
Pseudomonas aeruginosa [TaxId: 287]
(9)
1a
d3zdva_
A:
1b
d3zdvb_
B:
1c
d3zdvc_
C:
1d
d3zdvd_
D:
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CATH Domains
(0, 0)
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Sorry, no Info available
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Pfam Domains
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (169 KB)
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