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3ZC0
Asym. Unit
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Asym.Unit (412 KB)
Biol.Unit 1 (270 KB)
Biol.Unit 2 (271 KB)
Biol.Unit 3 (271 KB)
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(1)
Title
:
STRUCTURE OF AFC3PO - DUPLEX RNA COMPLEX
Authors
:
E. A. Parizotto, E. D. Lowe, J. S. Parker
Date
:
14 Nov 12 (Deposition) - 23 Jan 13 (Release) - 20 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.98
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O
Biol. Unit 1: E,F,G,H,I,J,K,L,N,O (1x)
Biol. Unit 2: A,B,C,D,M (2x)
Biol. Unit 3: E,F,G,H,I,J,K,L,N,O (1x)
Keywords
:
Hydrolase-Rna Complex, Translin, Trax, Rna Interference, Rnai, Rna Silencing, Sirna, Passenger Strand, Risc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. A. Parizotto, E. D. Lowe, J. S. Parker
Structural Basis For Duplex Rna Recognition And Cleavage By Archaeoglobus Fulgidus C3Po.
Nat. Struct. Mol. Biol. V. 20 380 2013
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
MG
12
Ligand/Ion
MAGNESIUM ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:83 , GLU A:118 , HOH A:2002 , HOH A:2003 , C M:11 , G M:12
BINDING SITE FOR RESIDUE MG A 197
02
AC2
SOFTWARE
GLU B:83 , GLU B:118 , HOH B:2001 , HOH B:2002
BINDING SITE FOR RESIDUE MG B 197
03
AC3
SOFTWARE
LYS B:61 , GLU B:102
BINDING SITE FOR RESIDUE CL B 219
04
AC4
SOFTWARE
GLU C:83 , GLU C:118 , HOH C:2002 , HOH C:2003 , HOH C:2004
BINDING SITE FOR RESIDUE MG C 197
05
AC5
SOFTWARE
GLU D:83 , GLU D:118 , HOH D:2002 , HOH D:2003
BINDING SITE FOR RESIDUE MG D 197
06
AC6
SOFTWARE
GLU E:83 , GLU E:118 , HOH E:2003 , C N:11 , G N:12
BINDING SITE FOR RESIDUE MG E 197
07
AC7
SOFTWARE
GLU F:83 , GLU F:118 , HOH F:2003 , HOH F:2004 , HOH F:2005
BINDING SITE FOR RESIDUE MG F 197
08
AC8
SOFTWARE
LYS F:61 , LEU F:101 , GLU F:102
BINDING SITE FOR RESIDUE CL F 219
09
AC9
SOFTWARE
GLU G:83 , GLU G:118 , HOH G:2003 , HOH G:2004
BINDING SITE FOR RESIDUE MG G 197
10
BC1
SOFTWARE
LYS G:126 , GLU G:129
BINDING SITE FOR RESIDUE CL G 221
11
BC2
SOFTWARE
GLU H:83 , GLU H:118 , HOH H:2002
BINDING SITE FOR RESIDUE MG H 197
12
BC3
SOFTWARE
GLU I:83 , GLU I:118 , HOH I:2002 , C O:11 , G O:12
BINDING SITE FOR RESIDUE MG I 197
13
BC4
SOFTWARE
GLU J:83 , GLU J:118 , HOH J:2002 , HOH J:2003
BINDING SITE FOR RESIDUE MG J 197
14
BC5
SOFTWARE
GLU K:83 , GLU K:118 , HOH K:2003 , HOH K:2004
BINDING SITE FOR RESIDUE MG K 197
15
BC6
SOFTWARE
LYS K:126 , GLU K:129
BINDING SITE FOR RESIDUE CL K 221
16
BC7
SOFTWARE
GLU L:83 , GLU L:118 , HOH L:2002 , HOH L:2003
BINDING SITE FOR RESIDUE MG L 197
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Protein & NOT Site
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Chain A
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Chain D
Chain E
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Chain H
Chain I
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Chain K
Chain L
Chain M
Chain N
Chain O
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (412 KB)
Header - Asym.Unit
Biol.Unit 1 (270 KB)
Header - Biol.Unit 1
Biol.Unit 2 (271 KB)
Header - Biol.Unit 2
Biol.Unit 3 (271 KB)
Header - Biol.Unit 3
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