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3YGS
Asym. Unit
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Asym.Unit (40 KB)
Biol.Unit 1 (36 KB)
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(1)
Title
:
APAF-1 CARD IN COMPLEX WITH PRODOMAIN OF PROCASPASE-9
Authors
:
H. Qin, S. Srinivasula, G. Wu, T. Fernandes-Alnemri, E. Alnemri, Y. Shi
Date
:
08 May 99 (Deposition) - 19 Apr 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : C,P
Biol. Unit 1: C,P (1x)
Keywords
:
Apoptosis, Caspase Activation, Caspase Recruitment, Recognition Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Qin, S. M. Srinivasula, G. Wu, T. Fernandes-Alnemri, E. S. Alnemri, Y. Shi
Structural Basis Of Procaspase-9 Recruitment By The Apoptotic Protease-Activating Factor 1.
Nature V. 399 549 1999
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sorry, no Info available
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Sites
(0, 0)
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_015415 (V29V, chain P, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_015415
A
28
V
CASP9_HUMAN
Polymorphism
1052571
P
V
29
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CARD (P:2-93,C:1-90)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARD
PS50209
CARD caspase recruitment domain profile.
CASP9_HUMAN
1-92
1
P:2-93
APAF_HUMAN
1-90
1
C:1-90
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Exons
(2, 2)
Info
All Exons
Exon 1.3a (P:2-45)
Exon 1.5b (P:46-97)
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/1.5b
3: Boundary 1.5b/1.6
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000333868
3a
ENSE00002180383
chr1:
15850790-15850564
227
CASP9_HUMAN
1-44
44
1
P:2-45
44
1.5b
ENST00000333868
5b
ENSE00001801656
chr1:
15844890-15844605
286
CASP9_HUMAN
45-140
96
1
P:46-97
52
1.6
ENST00000333868
6
ENSE00001749155
chr1:
15834402-15834368
35
CASP9_HUMAN
140-151
12
0
-
-
1.7b
ENST00000333868
7b
ENSE00001750610
chr1:
15833570-15833394
177
CASP9_HUMAN
152-210
59
0
-
-
1.8
ENST00000333868
8
ENSE00000906102
chr1:
15832574-15832485
90
CASP9_HUMAN
211-240
30
0
-
-
1.9c
ENST00000333868
9c
ENSE00002163370
chr1:
15831253-15831106
148
CASP9_HUMAN
241-290
50
0
-
-
1.10
ENST00000333868
10
ENSE00002200581
chr1:
15821947-15821768
180
CASP9_HUMAN
290-350
61
0
-
-
1.11
ENST00000333868
11
ENSE00001591302
chr1:
15820496-15820387
110
CASP9_HUMAN
350-386
37
0
-
-
1.12d
ENST00000333868
12d
ENSE00001938542
chr1:
15819530-15818765
766
CASP9_HUMAN
387-416
30
0
-
-
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3ygsc_ (C:)
2a: SCOP_d3ygsp_ (P:)
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Class
:
All alpha proteins
(14657)
Fold
:
DEATH domain
(37)
Superfamily
:
DEATH domain
(37)
Family
:
Caspase recruitment domain, CARD
(10)
Protein domain
:
Apoptotic protease activating factor 1, APAF-1
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d3ygsc_
C:
Protein domain
:
Procaspase 9 prodomain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d3ygsp_
P:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3ygsC00 (C:1-95)
1b: CATH_3ygsP00 (P:1-97)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Death Domain, Fas
(26)
Homologous Superfamily
:
Death Domain, Fas
(26)
Human (Homo sapiens)
(20)
1a
3ygsC00
C:1-95
1b
3ygsP00
P:1-97
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_CARD_3ygsC01 (C:6-90)
1b: PFAM_CARD_3ygsP01 (P:7-93)
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Clan
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Death
(18)
Family
:
CARD
(5)
Homo sapiens (Human)
(4)
1a
CARD-3ygsC01
C:6-90
1b
CARD-3ygsP01
P:7-93
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Asymmetric Unit 1
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