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3X1T
Asym. Unit
Info
Asym.Unit (253 KB)
Biol.Unit 1 (246 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NUCLEOSOME CORE PARTICLE CONSISTING OF MOUSE TESTIS SPECIFIC HISTONE VARIANTS H2AA AND H2BA
Authors
:
P. Sivaraman, T. S. Kumarevel
Date
:
27 Nov 14 (Deposition) - 23 Sep 15 (Release) - 23 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.81
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
Histone Variants Of H2A And H2B, , Reprogramming, Chromatin, Structural Protein-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Padavattan, T. Shinagawa, K. Hasegawa, T. Kumasaka, S. Ishii, T. Kumarevel
Structural And Functional Analyses Of Nucleosome Complexes With Mouse Histone Variants Th2A And Th2B, Involved In Reprogramming
Biochem. Biophys. Res. Commun. V. 464 929 2015
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Hetero Components
(2, 30)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
2g: MANGANESE (II) ION (MNg)
2h: MANGANESE (II) ION (MNh)
2i: MANGANESE (II) ION (MNi)
2j: MANGANESE (II) ION (MNj)
2k: MANGANESE (II) ION (MNk)
2l: MANGANESE (II) ION (MNl)
2m: MANGANESE (II) ION (MNm)
2n: MANGANESE (II) ION (MNn)
2o: MANGANESE (II) ION (MNo)
2p: MANGANESE (II) ION (MNp)
2q: MANGANESE (II) ION (MNq)
2r: MANGANESE (II) ION (MNr)
2s: MANGANESE (II) ION (MNs)
2t: MANGANESE (II) ION (MNt)
2u: MANGANESE (II) ION (MNu)
2v: MANGANESE (II) ION (MNv)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
8
Ligand/Ion
CHLORIDE ION
2
MN
22
Ligand/Ion
MANGANESE (II) ION
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
DG I:68
BINDING SITE FOR RESIDUE MN I 201
02
AC2
SOFTWARE
DG I:121 , DG I:122 , MN I:209 , DC J:171
BINDING SITE FOR RESIDUE MN I 202
03
AC3
SOFTWARE
DA I:133 , MN I:206
BINDING SITE FOR RESIDUE MN I 203
04
AC4
SOFTWARE
DG I:78 , HOH J:401
BINDING SITE FOR RESIDUE MN I 204
05
AC5
SOFTWARE
MN I:203
BINDING SITE FOR RESIDUE MN I 206
06
AC6
SOFTWARE
DG I:100 , HOH I:301
BINDING SITE FOR RESIDUE MN I 207
07
AC7
SOFTWARE
DG I:121 , MN I:202 , MN I:210
BINDING SITE FOR RESIDUE MN I 209
08
AC8
SOFTWARE
DT I:120 , MN I:209
BINDING SITE FOR RESIDUE MN I 210
09
AC9
SOFTWARE
DG J:164 , DA J:165
BINDING SITE FOR RESIDUE MN J 301
10
BC1
SOFTWARE
DC J:247
BINDING SITE FOR RESIDUE MN J 302
11
BC2
SOFTWARE
DG J:185 , DG J:186
BINDING SITE FOR RESIDUE MN J 304
12
BC3
SOFTWARE
DG J:280
BINDING SITE FOR RESIDUE MN J 305
13
BC4
SOFTWARE
DG J:217
BINDING SITE FOR RESIDUE MN J 306
14
BC5
SOFTWARE
DA J:231 , DT J:232
BINDING SITE FOR RESIDUE MN J 307
15
BC6
SOFTWARE
DG J:267 , DG J:268
BINDING SITE FOR RESIDUE CL J 308
16
BC7
SOFTWARE
DG J:268
BINDING SITE FOR RESIDUE CL J 312
17
BC8
SOFTWARE
ASP A:81
BINDING SITE FOR RESIDUE MN A 201
18
BC9
SOFTWARE
HOH A:305
BINDING SITE FOR RESIDUE CL B 201
19
CC1
SOFTWARE
GLU C:64 , VAL D:48 , MN D:202 , ASP E:77
BINDING SITE FOR RESIDUE MN D 201
20
CC2
SOFTWARE
GLN D:47 , VAL D:48 , MN D:201 , ASP E:77
BINDING SITE FOR RESIDUE MN D 202
21
CC3
SOFTWARE
GLY C:44 , GLY C:46 , THR D:90 , SER D:91
BINDING SITE FOR RESIDUE CL D 203
22
CC4
SOFTWARE
GLY G:44 , ALA G:45 , GLY G:46 , ALA G:47 , THR H:90 , SER H:91
BINDING SITE FOR RESIDUE MN G 201
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (253 KB)
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