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3WYQ
Biol. Unit 1
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Asym.Unit (94 KB)
Biol.Unit 1 (173 KB)
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Title
:
CRYSTAL STRUCTURE OF THE LOW-IMMUNOGENIC CORE STREPTAVIDIN MUTANT LISA-314 (Y22S/Y83S/R84K/E101D/R103K/E116N) AT 1.0 A RESOLUTION
Authors
:
T. Kawato, E. Mizohata, T. Meshizuka, H. Doi, T. Kawamura, H. Matsumura K. Yumura, K. Tsumoto, T. Kodama, T. Inoue, A. Sugiyama
Date
:
05 Sep 14 (Deposition) - 24 Dec 14 (Release) - 24 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Beta-Barrel, Biotin Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Kawato, E. Mizohata, T. Meshizuka, H. Doi, T. Kawamura, H. Matsumura, K. Yumura, K. Tsumoto, T. Kodama, T. Inoue, A. Sugiyama
Crystal Structure Of Streptavidin Mutant With Low Immunogenicity
J. Biosci. Bioeng. 2014
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Hetero Components
(3, 26)
Info
All Hetero Components
1a: BIOTIN (BTNa)
1b: BIOTIN (BTNb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
3a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BTN
4
Ligand/Ion
BIOTIN
2
GOL
20
Ligand/Ion
GLYCEROL
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:23 , LEU A:25 , SER A:27 , TYR A:43 , SER A:45 , VAL A:47 , GLY A:48 , ASN A:49 , TRP A:79 , SER A:88 , THR A:90 , TRP A:108 , ASP A:128 , GOL A:1006
BINDING SITE FOR RESIDUE BTN A 1001
02
AC2
SOFTWARE
GLN A:95 , ASN A:105 , THR A:106 , GLN A:107 , HIS A:127 , GOL A:1005 , HOH A:1157 , HOH A:1158 , HOH A:1193 , SER B:122
BINDING SITE FOR RESIDUE GOL A 1002
03
AC3
SOFTWARE
LEU A:25 , VAL A:47 , THR A:115 , ASN A:116 , ALA A:117 , HOH A:1129 , GLY B:68 , ALA B:117
BINDING SITE FOR RESIDUE GOL A 1003
04
AC4
SOFTWARE
GLY A:34 , ALA A:35 , ASP A:36 , ALA A:38 , ARG A:53 , SO4 A:1008 , HOH A:1113 , HOH A:1115 , HOH A:1179
BINDING SITE FOR RESIDUE GOL A 1004
05
AC5
SOFTWARE
GLN A:24 , LEU A:25 , GLY A:126 , HIS A:127 , GOL A:1002 , HOH A:1158 , HOH A:1174 , TRP B:120 , HOH B:1164
BINDING SITE FOR RESIDUE GOL A 1005
06
AC6
SOFTWARE
BTN A:1001 , HOH A:1188 , HOH A:1225 , TRP B:120 , HOH B:1204
BINDING SITE FOR RESIDUE GOL A 1006
07
AC7
SOFTWARE
GLU A:14 , GLY A:16 , TYR A:96 , GLY A:99 , ARG B:53
BINDING SITE FOR RESIDUE GOL A 1007
08
AC8
SOFTWARE
ALA A:13 , GLY A:34 , ALA A:35 , SER A:52 , ARG A:53 , GOL A:1004 , HOH A:1143 , HOH A:1179 , HOH A:1227
BINDING SITE FOR RESIDUE SO4 A 1008
09
AC9
SOFTWARE
ASN B:23 , LEU B:25 , SER B:27 , TYR B:43 , SER B:45 , VAL B:47 , ASN B:49 , TRP B:79 , SER B:88 , THR B:90 , TRP B:108 , ASP B:128 , GOL B:1005 , HOH B:1157
BINDING SITE FOR RESIDUE BTN B 1001
10
BC1
SOFTWARE
HOH A:1209 , SER B:69 , GLY B:70 , THR B:71 , TYR B:96 , VAL B:97 , GLY B:98 , THR B:115 , ASN B:116 , ALA B:117
BINDING SITE FOR RESIDUE GOL B 1002
11
BC2
SOFTWARE
TRP A:120 , HOH A:1172 , GLN B:24 , LEU B:25 , TRP B:108 , GLY B:126 , HIS B:127 , ASP B:128 , HOH B:1200
BINDING SITE FOR RESIDUE GOL B 1003
12
BC3
SOFTWARE
SER A:69 , GLY B:99 , ALA B:100 , GLY B:113 , THR B:114 , THR B:115 , ASN B:118 , HOH B:1220
BINDING SITE FOR RESIDUE GOL B 1004
13
BC4
SOFTWARE
BTN B:1001 , HOH B:1152 , HOH B:1157 , HOH B:1161
BINDING SITE FOR RESIDUE GOL B 1005
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asym.Unit (94 KB)
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Header - Biol.Unit 1
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