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3WWG
Biol. Unit 3
Info
Asym.Unit (367 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (96 KB)
Biol.Unit 3 (95 KB)
Biol.Unit 4 (94 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE N-GLYCAN-DEFICIENT VARIANT N448A OF ISOPULLULANASE COMPLEXED WITH ISOPANOSE
Authors
:
T. Miyazaki, H. Yashiro, A. Nishikawa, T. Tonozuka
Date
:
17 Jun 14 (Deposition) - 12 Nov 14 (Release) - 15 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Beta-Helix, Glycoside Hydrolase Family 49, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Miyazaki, H. Yashiro, A. Nishikawa, T. Tonozuka
The Side Chain Of A Glycosylated Asparagine Residue Is Important For The Stability Of Isopullulanase
J. Biochem. V. 157 225 2015
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
2a: ALPHA-D-GLUCOSE (GLCa)
3a: MALTOSE (MALa)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
4ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
4ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
4ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
4ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
4af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
4v: N-ACETYL-D-GLUCOSAMINE (NAGv)
4w: N-ACETYL-D-GLUCOSAMINE (NAGw)
4x: N-ACETYL-D-GLUCOSAMINE (NAGx)
4y: N-ACETYL-D-GLUCOSAMINE (NAGy)
4z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BGC
-1
Ligand/Ion
BETA-D-GLUCOSE
2
GLC
-1
Ligand/Ion
ALPHA-D-GLUCOSE
3
MAL
1
Ligand/Ion
MALTOSE
4
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: BC9 (SOFTWARE)
03: CC1 (SOFTWARE)
04: CC2 (SOFTWARE)
05: CC3 (SOFTWARE)
06: CC4 (SOFTWARE)
07: CC5 (SOFTWARE)
08: CC6 (SOFTWARE)
09: CC7 (SOFTWARE)
10: CC8 (SOFTWARE)
11: DC3 (SOFTWARE)
12: DC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN C:351 , ASP C:372 , VAL C:394 , ALA C:395 , TRP C:402 , GLY C:426 , ASN C:427 , ASN C:428 , PRO C:442 , ASP C:443 , HOH C:1234
BINDING SITE FOR RESIDUE MAL C 1010
02
BC9
SOFTWARE
ASN C:24 , HOH C:1232
BINDING SITE FOR MONO-SACCHARIDE NAG C1001 BOUND TO ASN C 24
03
CC1
SOFTWARE
ASN C:94 , SER C:164 , GLU C:174 , HOH C:1167 , HOH C:1207
BINDING SITE FOR MONO-SACCHARIDE NAG C1002 BOUND TO ASN C 94
04
CC2
SOFTWARE
ASN C:138
BINDING SITE FOR MONO-SACCHARIDE NAG C1003 BOUND TO ASN C 138
05
CC3
SOFTWARE
ASN C:210 , THR C:211 , ASP C:230 , THR D:42
BINDING SITE FOR MONO-SACCHARIDE NAG C1004 BOUND TO ASN C 210
06
CC4
SOFTWARE
ASN C:381 , GLU C:408 , LYS D:490 , ILE D:563
BINDING SITE FOR MONO-SACCHARIDE NAG C1005 BOUND TO ASN C 381
07
CC5
SOFTWARE
ASN C:453 , ASN C:455 , ASP C:514 , ASN C:516
BINDING SITE FOR MONO-SACCHARIDE NAG C1006 BOUND TO ASN C 455
08
CC6
SOFTWARE
ASN C:409 , LEU C:411 , ASN C:460 , HOH C:1102 , HOH C:1116 , HOH C:1126 , HOH C:1154 , ASN D:460 , ILE D:461 , THR D:462 , ASN D:486 , SER D:488 , LYS D:490
BINDING SITE FOR MONO-SACCHARIDE NAG C1007 BOUND TO ASN C 460
09
CC7
SOFTWARE
ASN C:465 , ASN C:491
BINDING SITE FOR MONO-SACCHARIDE NAG C1008 BOUND TO ASN C 491
10
CC8
SOFTWARE
ALA C:425 , ASN C:503
BINDING SITE FOR MONO-SACCHARIDE NAG C1009 BOUND TO ASN C 503
11
DC3
SOFTWARE
SER C:488 , LYS C:490 , SER C:527 , GLU C:529 , ILE C:563 , HOH C:1228 , ASN D:381 , ASN D:409
BINDING SITE FOR MONO-SACCHARIDE NAG D1004 BOUND TO ASN D 381
12
DC5
SOFTWARE
ASN C:460 , ILE C:461 , THR C:462 , ASN C:486 , SER C:488 , LYS C:490 , HOH C:1116 , HOH C:1126 , ASN D:409 , LEU D:411 , ASN D:460 , HOH D:1217
BINDING SITE FOR MONO-SACCHARIDE NAG D1006 BOUND TO ASN D 460
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain C
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (367 KB)
Header - Asym.Unit
Biol.Unit 1 (95 KB)
Header - Biol.Unit 1
Biol.Unit 2 (96 KB)
Header - Biol.Unit 2
Biol.Unit 3 (95 KB)
Header - Biol.Unit 3
Biol.Unit 4 (94 KB)
Header - Biol.Unit 4
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