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3WWG
Asym. Unit
Info
Asym.Unit (367 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (96 KB)
Biol.Unit 3 (95 KB)
Biol.Unit 4 (94 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE N-GLYCAN-DEFICIENT VARIANT N448A OF ISOPULLULANASE COMPLEXED WITH ISOPANOSE
Authors
:
T. Miyazaki, H. Yashiro, A. Nishikawa, T. Tonozuka
Date
:
17 Jun 14 (Deposition) - 12 Nov 14 (Release) - 15 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Beta-Helix, Glycoside Hydrolase Family 49, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Miyazaki, H. Yashiro, A. Nishikawa, T. Tonozuka
The Side Chain Of A Glycosylated Asparagine Residue Is Important For The Stability Of Isopullulanase
J. Biochem. V. 157 225 2015
[
close entry info
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Hetero Components
(4, 35)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
2a: ALPHA-D-GLUCOSE (GLCa)
3a: MALTOSE (MALa)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
4ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
4ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
4ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
4ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
4af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
4v: N-ACETYL-D-GLUCOSAMINE (NAGv)
4w: N-ACETYL-D-GLUCOSAMINE (NAGw)
4x: N-ACETYL-D-GLUCOSAMINE (NAGx)
4y: N-ACETYL-D-GLUCOSAMINE (NAGy)
4z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
2
GLC
1
Ligand/Ion
ALPHA-D-GLUCOSE
3
MAL
1
Ligand/Ion
MALTOSE
4
NAG
32
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN C:351 , ASP C:372 , VAL C:394 , ALA C:395 , TRP C:402 , GLY C:426 , ASN C:427 , ASN C:428 , PRO C:442 , ASP C:443 , HOH C:1234
BINDING SITE FOR RESIDUE MAL C 1010
02
AC2
SOFTWARE
ASN A:24
BINDING SITE FOR MONO-SACCHARIDE NAG A1001 BOUND TO ASN A 24
03
AC3
SOFTWARE
ASN A:94 , ILE A:163 , SER A:164 , GLU A:174 , HOH A:1226
BINDING SITE FOR MONO-SACCHARIDE NAG A1002 BOUND TO ASN A 94
04
AC4
SOFTWARE
ASN A:210 , ASP A:230 , THR B:42
BINDING SITE FOR MONO-SACCHARIDE NAG A1003 BOUND TO ASN A 210
05
AC5
SOFTWARE
ASP A:333 , ASN A:381 , LYS B:490 , SER B:527 , ILE B:563
BINDING SITE FOR MONO-SACCHARIDE NAG A1004 BOUND TO ASN A 381
06
AC6
SOFTWARE
ASN A:453 , ASN A:455 , ASP A:514 , ASN A:516
BINDING SITE FOR MONO-SACCHARIDE NAG A1005 BOUND TO ASN A 455
07
AC7
SOFTWARE
ASN A:409 , LEU A:411 , ASN A:460 , HOH A:1102 , HOH A:1123 , HOH A:1132 , HOH A:1220 , ASN B:460 , ILE B:461 , THR B:462 , ASN B:486 , SER B:488 , LYS B:490
BINDING SITE FOR MONO-SACCHARIDE NAG A1006 BOUND TO ASN A 460
08
AC8
SOFTWARE
ASN A:465 , LYS A:490 , ASN A:491 , HOH A:1230
BINDING SITE FOR MONO-SACCHARIDE NAG A1007 BOUND TO ASN A 491
09
AC9
SOFTWARE
SER A:501 , ASN A:503
BINDING SITE FOR MONO-SACCHARIDE NAG A1008 BOUND TO ASN A 503
10
BC1
SOFTWARE
ASN B:24 , HOH B:1102
BINDING SITE FOR MONO-SACCHARIDE NAG B1001 BOUND TO ASN B 24
11
BC2
SOFTWARE
ASN B:94 , SER B:164 , GLU B:174
BINDING SITE FOR MONO-SACCHARIDE NAG B1002 BOUND TO ASN B 94
12
BC3
SOFTWARE
ASN B:210 , ASP B:230 , HOH B:1184
BINDING SITE FOR MONO-SACCHARIDE NAG B1003 BOUND TO ASN B 210
13
BC4
SOFTWARE
SER A:488 , SER A:527 , ILE A:563 , SER B:380 , ASN B:381 , HOH B:1216 , HOH B:1275
BINDING SITE FOR MONO-SACCHARIDE NAG B1004 BOUND TO ASN B 381
14
BC5
SOFTWARE
ASN A:460 , ILE A:461 , THR A:462 , ASN A:486 , SER A:488 , LYS A:490 , HOH A:1123 , HOH A:1132 , ASN B:409 , LEU B:411 , ASN B:460 , HOH B:1101 , HOH B:1216
BINDING SITE FOR MONO-SACCHARIDE NAG B1005 BOUND TO ASN B 460
15
BC6
SOFTWARE
ASN B:465 , ASN B:491 , HOH B:1224
BINDING SITE FOR MONO-SACCHARIDE NAG B1006 BOUND TO ASN B 491
16
BC7
SOFTWARE
SER B:501 , ASN B:503
BINDING SITE FOR MONO-SACCHARIDE NAG B1007 BOUND TO ASN B 503
17
BC8
SOFTWARE
ASN B:293 , ASN B:323 , GLN B:351 , ASP B:353 , ASP B:372 , ASP B:373 , LYS B:376 , TRP B:402 , TYR B:438
BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 1008 TO 1009
18
BC9
SOFTWARE
ASN C:24 , HOH C:1232
BINDING SITE FOR MONO-SACCHARIDE NAG C1001 BOUND TO ASN C 24
19
CC1
SOFTWARE
ASN C:94 , SER C:164 , GLU C:174 , HOH C:1167 , HOH C:1207
BINDING SITE FOR MONO-SACCHARIDE NAG C1002 BOUND TO ASN C 94
20
CC2
SOFTWARE
ASN C:138
BINDING SITE FOR MONO-SACCHARIDE NAG C1003 BOUND TO ASN C 138
21
CC3
SOFTWARE
ASN C:210 , THR C:211 , ASP C:230 , THR D:42
BINDING SITE FOR MONO-SACCHARIDE NAG C1004 BOUND TO ASN C 210
22
CC4
SOFTWARE
ASN C:381 , GLU C:408 , LYS D:490 , ILE D:563
BINDING SITE FOR MONO-SACCHARIDE NAG C1005 BOUND TO ASN C 381
23
CC5
SOFTWARE
ASN C:453 , ASN C:455 , ASP C:514 , ASN C:516
BINDING SITE FOR MONO-SACCHARIDE NAG C1006 BOUND TO ASN C 455
24
CC6
SOFTWARE
ASN C:409 , LEU C:411 , ASN C:460 , HOH C:1102 , HOH C:1116 , HOH C:1126 , HOH C:1154 , ASN D:460 , ILE D:461 , THR D:462 , ASN D:486 , SER D:488 , LYS D:490
BINDING SITE FOR MONO-SACCHARIDE NAG C1007 BOUND TO ASN C 460
25
CC7
SOFTWARE
ASN C:465 , ASN C:491
BINDING SITE FOR MONO-SACCHARIDE NAG C1008 BOUND TO ASN C 491
26
CC8
SOFTWARE
ALA C:425 , ASN C:503
BINDING SITE FOR MONO-SACCHARIDE NAG C1009 BOUND TO ASN C 503
27
CC9
SOFTWARE
ASN D:24 , THR D:30 , TRP D:31
BINDING SITE FOR MONO-SACCHARIDE NAG D1001 BOUND TO ASN D 24
28
DC1
SOFTWARE
ASN D:94 , SER D:164 , GLU D:174 , HOH D:1155
BINDING SITE FOR MONO-SACCHARIDE NAG D1002 BOUND TO ASN D 94
29
DC2
SOFTWARE
LEU D:207 , ASN D:210 , THR D:211 , ASP D:230
BINDING SITE FOR MONO-SACCHARIDE NAG D1003 BOUND TO ASN D 210
30
DC3
SOFTWARE
SER C:488 , LYS C:490 , SER C:527 , GLU C:529 , ILE C:563 , HOH C:1228 , ASN D:381 , ASN D:409
BINDING SITE FOR MONO-SACCHARIDE NAG D1004 BOUND TO ASN D 381
31
DC4
SOFTWARE
GLY D:452 , ASN D:453 , ASN D:455 , ASP D:514 , ASN D:516
BINDING SITE FOR MONO-SACCHARIDE NAG D1005 BOUND TO ASN D 455
32
DC5
SOFTWARE
ASN C:460 , ILE C:461 , THR C:462 , ASN C:486 , SER C:488 , LYS C:490 , HOH C:1116 , HOH C:1126 , ASN D:409 , LEU D:411 , ASN D:460 , HOH D:1217
BINDING SITE FOR MONO-SACCHARIDE NAG D1006 BOUND TO ASN D 460
33
DC6
SOFTWARE
ASN D:465 , LYS D:490 , ASN D:491 , HOH D:1187
BINDING SITE FOR MONO-SACCHARIDE NAG D1007 BOUND TO ASN D 491
34
DC7
SOFTWARE
ALA D:425 , ASN D:503 , TRP D:508 , HOH D:1210
BINDING SITE FOR MONO-SACCHARIDE NAG D1008 BOUND TO ASN D 503
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Asym.Unit (367 KB)
Header - Asym.Unit
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Biol.Unit 2 (96 KB)
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Biol.Unit 3 (95 KB)
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