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3WV9
Asym. Unit
Info
Asym.Unit (274 KB)
Biol.Unit 1 (69 KB)
Biol.Unit 2 (68 KB)
Biol.Unit 3 (69 KB)
Biol.Unit 4 (69 KB)
Biol.Unit 5 (199 KB)
Biol.Unit 6 (197 KB)
Biol.Unit 7 (200 KB)
Biol.Unit 8 (198 KB)
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(1)
Title
:
GUANYLYLPYRIDINOL (GP)- AND ATP-BOUND HCGE FROM METHANOTHERMOBACTER MARBURGENSIS
Authors
:
T. Fujishiro, U. Ermler, S. Shima
Date
:
16 May 14 (Deposition) - 29 Apr 15 (Release) - 29 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A (3x)
Biol. Unit 6: B (3x)
Biol. Unit 7: C (3x)
Biol. Unit 8: D (3x)
Keywords
:
E1 Enzyme Superfamily, Uba/Thif-Type Nad/Fad Binding Fold, Adenylyltransferase, Atp Binding, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
T. Fujishiro, J. Kahnt, U. Ermler, S. Shima
Protein-Pyridinol Thioester Precursor For Biosynthesis Of The Organometallic Acyl-Iron Ligand In [Fe]-Hydrogenase Cofactor
Nat Commun V. 6 6895 2015
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
1c: ADENOSINE-5'-TRIPHOSPHATE (ATPc)
1d: ADENOSINE-5'-TRIPHOSPHATE (ATPd)
2a: 5'-O-[(S)-{[2-(CARBOXYMETHYL)-6-HY... (FEGa)
2b: 5'-O-[(S)-{[2-(CARBOXYMETHYL)-6-HY... (FEGb)
2c: 5'-O-[(S)-{[2-(CARBOXYMETHYL)-6-HY... (FEGc)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
4
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
FEG
3
Ligand/Ion
5'-O-[(S)-{[2-(CARBOXYMETHYL)-6-HYDROXY-3,5-DIMETHYLPYRIDIN-4-YL]OXY}(HYDROXY)PHOSPHORYL]GUANOSINE
3
SO4
9
Ligand/Ion
SULFATE ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:20 , GLY A:22 , ARG A:23 , ASP A:47 , GLN A:49 , LYS A:69 , ILE A:92 , ILE A:109 , ALA A:110 , GLY A:111 , FEG A:302
BINDING SITE FOR RESIDUE ATP A 301
02
AC2
SOFTWARE
GLU A:7 , ARG A:23 , LEU A:24 , ILE A:109 , ALA A:110 , ASP A:113 , THR A:114 , LEU A:115 , THR A:135 , GLY A:137 , VAL A:138 , PHE A:139 , ILE A:160 , LEU A:180 , ILE A:181 , ARG A:182 , ATP A:301
BINDING SITE FOR RESIDUE FEG A 302
03
AC3
SOFTWARE
ARG A:98 , TYR A:124 , TYR C:68
BINDING SITE FOR RESIDUE SO4 A 303
04
AC4
SOFTWARE
GLU A:15 , GLY A:101 , GLY A:102 , LYS C:71
BINDING SITE FOR RESIDUE SO4 A 304
05
AC5
SOFTWARE
HIS A:13 , GLY A:39 , LEU A:207 , ARG A:208
BINDING SITE FOR RESIDUE SO4 A 305
06
AC6
SOFTWARE
GLY B:22 , ARG B:23 , HIS B:36 , ARG B:37 , ILE B:46 , ASP B:47 , GLN B:49 , ASP B:55 , LYS B:69 , TYR B:91 , ILE B:92 , ILE B:109 , ALA B:110 , FEG B:302
BINDING SITE FOR RESIDUE ATP B 301
07
AC7
SOFTWARE
ARG B:23 , LEU B:24 , ALA B:110 , ASP B:113 , THR B:114 , THR B:135 , MET B:136 , GLY B:137 , VAL B:138 , PRO B:159 , ILE B:160 , LEU B:180 , ILE B:181 , ARG B:182 , ATP B:301
BINDING SITE FOR RESIDUE FEG B 302
08
AC8
SOFTWARE
LYS B:50 , TYR B:68 , ARG D:98 , TYR D:124
BINDING SITE FOR RESIDUE SO4 B 303
09
AC9
SOFTWARE
TYR A:68 , TYR C:124 , ARG C:128
BINDING SITE FOR RESIDUE SO4 C 301
10
BC1
SOFTWARE
VAL C:19 , GLY C:20 , GLY C:22 , ARG C:23 , HIS C:36 , ILE C:46 , ASP C:47 , GLN C:49 , LYS C:69 , ILE C:109 , ALA C:110 , FEG C:303 , HOH C:403
BINDING SITE FOR RESIDUE ATP C 302
11
BC2
SOFTWARE
HIS C:36 , ARG C:37 , ILE C:109 , ALA C:110 , THR C:114 , THR C:135 , VAL C:138 , PHE C:139 , PRO C:159 , ILE C:160 , LYS C:179 , ILE C:181 , ARG C:182 , ATP C:302
BINDING SITE FOR RESIDUE FEG C 303
12
BC3
SOFTWARE
SER A:82 , PHE C:81 , SER C:82
BINDING SITE FOR RESIDUE SO4 C 304
13
BC4
SOFTWARE
GLU C:120
BINDING SITE FOR RESIDUE SO4 C 305
14
BC5
SOFTWARE
ARG C:59
BINDING SITE FOR RESIDUE SO4 C 306
15
BC6
SOFTWARE
VAL D:19 , GLY D:22 , ARG D:23 , HIS D:36 , ILE D:46 , ASP D:47 , GLN D:49 , ASP D:54 , ASP D:55 , LYS D:69 , TYR D:91 , ILE D:92 , ILE D:109 , ALA D:110
BINDING SITE FOR RESIDUE ATP D 301
16
BC7
SOFTWARE
TYR B:124 , LYS D:50 , TYR D:68
BINDING SITE FOR RESIDUE SO4 D 302
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (274 KB)
Header - Asym.Unit
Biol.Unit 1 (69 KB)
Header - Biol.Unit 1
Biol.Unit 2 (68 KB)
Header - Biol.Unit 2
Biol.Unit 3 (69 KB)
Header - Biol.Unit 3
Biol.Unit 4 (69 KB)
Header - Biol.Unit 4
Biol.Unit 5 (199 KB)
Header - Biol.Unit 5
Biol.Unit 6 (197 KB)
Header - Biol.Unit 6
Biol.Unit 7 (200 KB)
Header - Biol.Unit 7
Biol.Unit 8 (198 KB)
Header - Biol.Unit 8
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