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Asym. Unit
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Asym.Unit (53 KB)
Biol.Unit 1 (25 KB)
Biol.Unit 2 (25 KB)
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(1)
Title
:
O-GLYCAN ATTACHED TO HERPES SIMPLEX VIRUS TYPE 1 GLYCOPROTEIN GB IS RECOGNIZED BY THE IG V-SET DOMAIN OF HUMAN PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR ALPHA
Authors
:
K. Kuroki, J. Wang, T. Ose, M. Yamaguchi, S. Tabata, N. Maita, S. Nakamur M. Kajikawa, A. Kogure, T. Satoh, H. Arase, K. Maenaka
Date
:
10 May 14 (Deposition) - 11 Jun 14 (Release) - 17 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,X,Y
Biol. Unit 1: A,X (1x)
Biol. Unit 2: B,Y (1x)
Keywords
:
Immunoglobulin-Like, Immunological Receptor, Membrane, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Kuroki, J. Wang, T. Ose, M. Yamaguchi, S. Tabata, N. Maita, S. Nakamura, M. Kajikawa, A. Kogure, T. Satoh, H. Arase, K. Maenaka
Structural Basis For Simultaneous Recognition Of An O-Glyca And Its Attached Peptide Of Mucin Family By Immune Receptor Pilr Alpha
Proc. Natl. Acad. Sci. Usa V. 111 8877 2014
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Ga)
1b: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gb)
2a: O-SIALIC ACID (SIAa)
2b: O-SIALIC ACID (SIAb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
A2G
2
Ligand/Ion
N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2
SIA
2
Ligand/Ion
O-SIALIC ACID
3
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:40 , LYS A:106 , SER A:107 , HOH A:312 , PRO X:56
BINDING SITE FOR RESIDUE SO4 A 201
02
AC2
SOFTWARE
ARG A:132 , ILE A:149 , HOH A:359 , HOH A:366
BINDING SITE FOR RESIDUE SO4 A 202
03
AC3
SOFTWARE
ARG A:73 , HIS A:90 , ASP A:92 , TYR A:93 , ARG B:132
BINDING SITE FOR RESIDUE SO4 A 203
04
AC4
SOFTWARE
GLN B:105 , LYS B:106 , SER B:107 , HOH B:361
BINDING SITE FOR RESIDUE SO4 B 201
05
AC5
SOFTWARE
ARG B:68 , SER B:70 , ARG B:72 , SER B:80 , SER B:83 , ARG B:126 , HOH B:309
BINDING SITE FOR RESIDUE SO4 B 202
06
AC6
SOFTWARE
ARG B:73 , HIS B:90 , TYR B:93 , HOH B:364
BINDING SITE FOR RESIDUE SO4 B 203
07
AC7
SOFTWARE
HIS B:75 , PHE B:76 , HIS B:77 , HOH B:332 , HOH B:344 , HOH B:357 , PRO Y:56
BINDING SITE FOR RESIDUE SO4 B 204
08
AC8
SOFTWARE
HIS B:77 , GLU B:128 , ARG B:136 , GLN B:138 , A2G Y:102 , HOH Y:201
BINDING SITE FOR RESIDUE SO4 B 205
09
AC9
SOFTWARE
TYR A:33 , ARG A:126 , ARG A:136 , GLN A:137 , GLN A:138 , TRP A:139 , GLN A:140 , ILE A:142 , HOH A:322 , A2G X:102 , HOH X:202 , HOH X:203 , HOH X:208
BINDING SITE FOR RESIDUE SIA X 101
10
BC1
SOFTWARE
HIS A:77 , THR X:53 , PRO X:54 , ALA X:55 , PRO X:56 , SIA X:101 , HOH X:205 , HOH X:207
BINDING SITE FOR RESIDUE A2G X 102
11
BC2
SOFTWARE
TYR B:33 , ARG B:126 , GLN B:137 , GLN B:138 , TRP B:139 , GLN B:140 , ILE B:142 , HOH B:356 , A2G Y:102 , HOH Y:201 , HOH Y:202 , HOH Y:203 , HOH Y:206
BINDING SITE FOR RESIDUE SIA Y 101
12
BC3
SOFTWARE
PHE B:76 , HIS B:77 , ARG B:136 , SO4 B:205 , THR Y:53 , PRO Y:54 , ALA Y:55 , PRO Y:56 , SIA Y:101
BINDING SITE FOR RESIDUE A2G Y 102
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_060361 (G78G, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_060361
R
78
G
PILRA_HUMAN
Polymorphism
1859788
A/B
G
78
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Asym.Unit (53 KB)
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