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Asym. Unit
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Asym.Unit (149 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (72 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX COMPRISED OF ETS1(V170G), RUNX1, CBFBETA, AND THE TCRALPHA GENE ENHANCER DNA
Authors
:
M. Shiina, K. Hamada, K. Ogata
Date
:
21 Apr 14 (Deposition) - 20 Aug 14 (Release) - 20 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Keywords
:
Protein-Dna Complex, Transcription, Dna-Binding, Methylation, Nucleus, Phosphoprotein, Transcription Regulation, Isopeptide Bond, Proto-Oncogene, Transcription-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Shiina, K. Hamada, T. Inoue-Bungo, M. Shimamura, A. Uchiyama, S. Baba, K. Sato, M. Yamamoto, K. Ogata
A Novel Allosteric Mechanism On Protein-Dna Interactions Underlying The Phosphorylation-Dependent Regulation Of Ets1 Target Gene Expressions
J. Mol. Biol. 2014
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: ETS_DOMAIN_3 (C:335-415,H:335-415)
2: ETS_DOMAIN_1 (C:337-345,H:337-345)
3: ETS_DOMAIN_2 (C:381-396,H:381-396)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ETS_DOMAIN_3
PS50061
Ets-domain profile.
ETS1_HUMAN
335-415
2
C:335-415
H:335-415
2
ETS_DOMAIN_1
PS00345
Ets-domain signature 1.
ETS1_HUMAN
337-345
2
C:337-345
H:337-345
3
ETS_DOMAIN_2
PS00346
Ets-domain signature 2.
ETS1_HUMAN
381-396
2
C:381-396
H:381-396
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Exons
(3, 5)
Info
All Exons
Exon 1.11b (C:319-331 | -)
Exon 1.12b (C:331-370 | H:333-370)
Exon 1.13c (C:371-436 | H:371-433)
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1: Boundary 1.10a/1.11b
2: Boundary 1.11b/1.12b
3: Boundary 1.12b/1.13c
4: Boundary 1.13c/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.6b
ENST00000319397
6b
ENSE00002154831
chr11:
128392199-128391808
392
ETS1_HUMAN
1-28
28
0
-
-
1.7
ENST00000319397
7
ENSE00000917328
chr11:
128360471-128360352
120
ETS1_HUMAN
28-68
41
0
-
-
1.8
ENST00000319397
8
ENSE00000917327
chr11:
128359385-128359185
201
ETS1_HUMAN
68-135
68
0
-
-
1.9
ENST00000319397
9
ENSE00000917326
chr11:
128356041-128355964
78
ETS1_HUMAN
135-161
27
0
-
-
1.10a
ENST00000319397
10a
ENSE00000917325
chr11:
128354966-128354718
249
ETS1_HUMAN
161-244
84
0
-
-
1.11b
ENST00000319397
11b
ENSE00000917324
chr11:
128350346-128350086
261
ETS1_HUMAN
244-331
88
1
C:319-331
-
13
-
1.12b
ENST00000319397
12b
ENSE00000917323
chr11:
128333522-128333404
119
ETS1_HUMAN
331-370
40
2
C:331-370
H:333-370
40
38
1.13c
ENST00000319397
13c
ENSE00002159982
chr11:
128332471-128331745
727
ETS1_HUMAN
371-441
71
2
C:371-436
H:371-433
66
63
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Asym.Unit (149 KB)
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