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Getting 'PROSITE' information from database.
3WTN
Biol. Unit 1
Info
Asym.Unit (381 KB)
Biol.Unit 1 (191 KB)
Biol.Unit 10 (44 KB)
Biol.Unit 11 (43 KB)
Biol.Unit 12 (43 KB)
Biol.Unit 2 (187 KB)
Biol.Unit 3 (44 KB)
Biol.Unit 4 (45 KB)
Biol.Unit 5 (45 KB)
Biol.Unit 6 (44 KB)
Biol.Unit 7 (44 KB)
Biol.Unit 8 (44 KB)
Biol.Unit 9 (44 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LYMNAEA STAGNALIS ACETYLCHOLINE BINDING PROTEIN COMPLEXED WITH DESNITRO-IMIDACLOPRID
Authors
:
T. Okajima, M. Ihara, A. Yamashita, T. Oda, K. Matsuda
Date
:
11 Apr 14 (Deposition) - 04 Feb 15 (Release) - 04 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.09
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Biol. Unit 3: A (1x)
Biol. Unit 4: B (1x)
Biol. Unit 5: C (1x)
Biol. Unit 6: D (1x)
Biol. Unit 7: E (1x)
Biol. Unit 8: F (1x)
Biol. Unit 9: G (1x)
Biol. Unit 10: H (1x)
Biol. Unit 11: I (1x)
Biol. Unit 12: J (1x)
Keywords
:
Neonicotinoids, Nicotinic Acetylcholine Receptor, Imidacloprid, Acetylcholine Binding, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ihara, T. Okajima, A. Yamashita, T. Oda, T. Asano, M. Matsui, D. B. Sattelle, K. Matsuda
Studies On An Acetylcholine Binding Protein Identify A Basi Residue In Loop G On The Beta 1 Strand As A New Structural Determinant Of Neonicotinoid Actions
Mol. Pharmacol. V. 86 736 2014
[
close entry info
]
Hetero Components
(1, 5)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1aa: CADMIUM ION (CDaa)
1ab: CADMIUM ION (CDab)
1ac: CADMIUM ION (CDac)
1ad: CADMIUM ION (CDad)
1ae: CADMIUM ION (CDae)
1af: CADMIUM ION (CDaf)
1ag: CADMIUM ION (CDag)
1ah: CADMIUM ION (CDah)
1ai: CADMIUM ION (CDai)
1aj: CADMIUM ION (CDaj)
1ak: CADMIUM ION (CDak)
1al: CADMIUM ION (CDal)
1am: CADMIUM ION (CDam)
1an: CADMIUM ION (CDan)
1ao: CADMIUM ION (CDao)
1ap: CADMIUM ION (CDap)
1aq: CADMIUM ION (CDaq)
1ar: CADMIUM ION (CDar)
1as: CADMIUM ION (CDas)
1at: CADMIUM ION (CDat)
1au: CADMIUM ION (CDau)
1av: CADMIUM ION (CDav)
1aw: CADMIUM ION (CDaw)
1ax: CADMIUM ION (CDax)
1ay: CADMIUM ION (CDay)
1az: CADMIUM ION (CDaz)
1b: CADMIUM ION (CDb)
1ba: CADMIUM ION (CDba)
1bb: CADMIUM ION (CDbb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
1j: CADMIUM ION (CDj)
1k: CADMIUM ION (CDk)
1l: CADMIUM ION (CDl)
1m: CADMIUM ION (CDm)
1n: CADMIUM ION (CDn)
1o: CADMIUM ION (CDo)
1p: CADMIUM ION (CDp)
1q: CADMIUM ION (CDq)
1r: CADMIUM ION (CDr)
1s: CADMIUM ION (CDs)
1t: CADMIUM ION (CDt)
1u: CADMIUM ION (CDu)
1v: CADMIUM ION (CDv)
1w: CADMIUM ION (CDw)
1x: CADMIUM ION (CDx)
1y: CADMIUM ION (CDy)
1z: CADMIUM ION (CDz)
2a: (2Z)-1-[(6-CHLOROPYRIDIN-3-YL)METH... (N2Ya)
2b: (2Z)-1-[(6-CHLOROPYRIDIN-3-YL)METH... (N2Yb)
2c: (2Z)-1-[(6-CHLOROPYRIDIN-3-YL)METH... (N2Yc)
2d: (2Z)-1-[(6-CHLOROPYRIDIN-3-YL)METH... (N2Yd)
2e: (2Z)-1-[(6-CHLOROPYRIDIN-3-YL)METH... (N2Ye)
2f: (2Z)-1-[(6-CHLOROPYRIDIN-3-YL)METH... (N2Yf)
2g: (2Z)-1-[(6-CHLOROPYRIDIN-3-YL)METH... (N2Yg)
2h: (2Z)-1-[(6-CHLOROPYRIDIN-3-YL)METH... (N2Yh)
2i: (2Z)-1-[(6-CHLOROPYRIDIN-3-YL)METH... (N2Yi)
2j: (2Z)-1-[(6-CHLOROPYRIDIN-3-YL)METH... (N2Yj)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
2
N2Y
5
Ligand/Ion
(2Z)-1-[(6-CHLOROPYRIDIN-3-YL)METHYL]IMIDAZOLIDIN-2-IMINE
3
NA
-1
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(47, 47)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: FC8 (SOFTWARE)
44: GC4 (SOFTWARE)
45: GC6 (SOFTWARE)
46: GC7 (SOFTWARE)
47: HC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:89 , SER A:142 , TRP A:143 , TYR A:192 , TRP B:53 , ARG B:104 , LEU B:112
BINDING SITE FOR RESIDUE N2Y A 301
02
AC2
SOFTWARE
ASP A:2 , ASP A:5 , ASP G:2 , ASP G:5
BINDING SITE FOR RESIDUE CD A 302
03
AC3
SOFTWARE
GLU A:-1 , HIS A:69
BINDING SITE FOR RESIDUE CD A 303
04
AC4
SOFTWARE
ASP A:72
BINDING SITE FOR RESIDUE CD A 304
05
AC5
SOFTWARE
GLU A:43 , ASP A:129
BINDING SITE FOR RESIDUE CD A 305
06
AC6
SOFTWARE
ALA A:-2 , HOH A:535 , GLU G:-1
BINDING SITE FOR RESIDUE CD A 306
07
AC7
SOFTWARE
HIS A:69 , HOH A:490 , GLU G:131
BINDING SITE FOR RESIDUE CD A 307
08
AC8
SOFTWARE
ASP A:129
BINDING SITE FOR RESIDUE CD A 308
09
AC9
SOFTWARE
GLU A:172 , HOH A:554
BINDING SITE FOR RESIDUE CD A 309
10
BC1
SOFTWARE
TYR B:89 , SER B:142 , TRP B:143 , TYR B:185 , CYS B:187 , CYS B:188 , TYR B:192 , HOH B:410 , TRP C:53 , ARG C:104 , LEU C:112 , MET C:114
BINDING SITE FOR RESIDUE N2Y B 301
11
BC2
SOFTWARE
ASP B:2 , ASP B:5 , ASP F:2 , ASP F:5
BINDING SITE FOR RESIDUE CD B 302
12
BC3
SOFTWARE
GLU B:-1 , HIS B:69
BINDING SITE FOR RESIDUE CD B 303
13
BC4
SOFTWARE
ASP B:72 , NA B:309
BINDING SITE FOR RESIDUE CD B 304
14
BC5
SOFTWARE
GLU B:157 , ASP B:161 , HOH B:594 , ASP C:161 , NA C:309 , HOH C:450
BINDING SITE FOR RESIDUE CD B 305
15
BC6
SOFTWARE
GLU B:40
BINDING SITE FOR RESIDUE CD B 306
16
BC7
SOFTWARE
GLU B:172 , HOH B:461
BINDING SITE FOR RESIDUE CD B 307
17
BC8
SOFTWARE
HOH B:561 , GLU C:172 , HOH C:401
BINDING SITE FOR RESIDUE CD B 308
18
BC9
SOFTWARE
SER B:67 , SER B:70 , ASP B:72 , CD B:304 , HOH B:514 , HOH B:517
BINDING SITE FOR RESIDUE NA B 309
19
CC1
SOFTWARE
TYR C:89 , SER C:142 , TRP C:143 , TYR C:185 , CYS C:187 , TYR C:192 , HOH C:414 , TRP D:53 , ARG D:104 , LEU D:112 , MET D:114
BINDING SITE FOR RESIDUE N2Y C 301
20
CC2
SOFTWARE
ASP C:2 , ASP C:5 , ASP J:2 , ASP J:5
BINDING SITE FOR RESIDUE CD C 302
21
CC3
SOFTWARE
GLU C:-1 , HIS C:69 , HOH C:438
BINDING SITE FOR RESIDUE CD C 303
22
CC4
SOFTWARE
ASP C:72
BINDING SITE FOR RESIDUE CD C 304
23
CC5
SOFTWARE
GLU C:43 , ASP C:129
BINDING SITE FOR RESIDUE CD C 305
24
CC6
SOFTWARE
GLU B:163 , GLU C:163 , HOH C:508 , HOH C:510
BINDING SITE FOR RESIDUE CD C 306
25
CC7
SOFTWARE
ALA C:-2 , HOH C:574 , GLU J:-1
BINDING SITE FOR RESIDUE CD C 307
26
CC8
SOFTWARE
GLU C:157 , HOH C:404
BINDING SITE FOR RESIDUE CD C 308
27
CC9
SOFTWARE
ASP B:161 , ASP B:175 , CD B:305 , HOH B:594 , ASN C:158 , SER C:159 , ASP C:161 , HOH C:424
BINDING SITE FOR RESIDUE NA C 309
28
DC1
SOFTWARE
TYR D:89 , SER D:142 , TRP D:143 , TYR D:192 , TRP E:53 , ARG E:104 , LEU E:112 , MET E:114
BINDING SITE FOR RESIDUE N2Y D 301
29
DC2
SOFTWARE
ASP D:2 , ASP D:5 , ASP I:2 , ASP I:5
BINDING SITE FOR RESIDUE CD D 302
30
DC3
SOFTWARE
GLU D:-1 , HIS D:69
BINDING SITE FOR RESIDUE CD D 303
31
DC4
SOFTWARE
GLU D:196 , HOH D:502
BINDING SITE FOR RESIDUE CD D 304
32
DC5
SOFTWARE
SER D:151 , LYS D:180 , GLU D:193 , HOH D:402 , HOH D:444
BINDING SITE FOR RESIDUE CD D 305
33
DC6
SOFTWARE
HIS D:145 , GLU D:149 , HOH D:524 , SER E:75 , ARG E:104 , HOH E:408
BINDING SITE FOR RESIDUE CD D 306
34
DC7
SOFTWARE
ALA D:-2 , GLU D:-1 , HOH D:522 , ALA I:-2
BINDING SITE FOR RESIDUE CD D 307
35
DC8
SOFTWARE
GLU E:131
BINDING SITE FOR RESIDUE CD D 308
36
DC9
SOFTWARE
TRP A:53 , ARG A:104 , LEU A:112 , MET A:114 , TYR E:89 , SER E:142 , TRP E:143 , TYR E:185 , CYS E:187 , TYR E:192 , HOH E:405
BINDING SITE FOR RESIDUE N2Y E 301
37
EC1
SOFTWARE
ASP E:2 , ASP E:5 , ASP H:2 , ASP H:5
BINDING SITE FOR RESIDUE CD E 302
38
EC2
SOFTWARE
GLU E:-1 , HIS E:69
BINDING SITE FOR RESIDUE CD E 303
39
EC3
SOFTWARE
ASP E:72
BINDING SITE FOR RESIDUE CD E 304
40
EC4
SOFTWARE
GLU E:172
BINDING SITE FOR RESIDUE CD E 305
41
EC5
SOFTWARE
GLU E:-1 , HOH E:521 , ALA H:-2
BINDING SITE FOR RESIDUE CD E 306
42
EC6
SOFTWARE
ARG A:104 , HOH A:496 , HOH A:544 , HIS E:145 , GLU E:149
BINDING SITE FOR RESIDUE CD E 307
43
FC8
SOFTWARE
GLU E:190 , ASP G:160
BINDING SITE FOR RESIDUE CD G 306
44
GC4
SOFTWARE
ARG C:23 , GLU I:-1 , HIS I:69
BINDING SITE FOR RESIDUE CD I 302
45
GC6
SOFTWARE
GLU B:43 , ASP B:129 , GLU I:131 , HOH I:407
BINDING SITE FOR RESIDUE CD I 304
46
GC7
SOFTWARE
LYS B:203 , GLU I:43 , ASP I:129
BINDING SITE FOR RESIDUE CD I 305
47
HC2
SOFTWARE
HOH B:525 , GLU J:-1 , HIS J:69
BINDING SITE FOR RESIDUE CD J 302
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
close PROSITE info
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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)
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Asym.Unit (381 KB)
Header - Asym.Unit
Biol.Unit 1 (191 KB)
Header - Biol.Unit 1
Biol.Unit 10 (44 KB)
Header - Biol.Unit 10
Biol.Unit 11 (43 KB)
Header - Biol.Unit 11
Biol.Unit 12 (43 KB)
Header - Biol.Unit 12
Biol.Unit 2 (187 KB)
Header - Biol.Unit 2
Biol.Unit 3 (44 KB)
Header - Biol.Unit 3
Biol.Unit 4 (45 KB)
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Biol.Unit 5 (45 KB)
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Biol.Unit 7 (44 KB)
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Biol.Unit 8 (44 KB)
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Biol.Unit 9 (44 KB)
Header - Biol.Unit 9
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