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3WOR
Asym. Unit
Info
Asym.Unit (247 KB)
Biol.Unit 1 (240 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE DAP BII OCTAPEPTIDE COMPLEX
Authors
:
Y. Sakamoto, Y. Suzuki, I. Iizuka, C. Tateoka, S. Roppongi, M. Fujimoto T. Nonaka, W. Ogasawara, N. Tanaka
Date
:
29 Dec 13 (Deposition) - 03 Sep 14 (Release) - 03 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Chymotrypsin Fold, S46 Peptidase, Hydrolase-Hormone Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Sakamoto, Y. Suzuki, I. Iizuka, C. Tateoka, S. Roppongi, M. Fujimoto, K. Inaka, H. Tanaka, M. Masaki, K. Ohta, H. Okada, T. Nonaka, Y. Morikawa, K. T. Nakamura, W. Ogasawara, N. Tanaka
S46 Peptidases Are The First Exopeptidases To Be Members Of Clan Pa
Sci Rep V. 4 4977 2014
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Hetero Components
(2, 13)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
9
Ligand/Ion
GLYCEROL
2
ZN
4
Ligand/Ion
ZINC ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:598 , PHE A:600 , ILE A:639 , HOH A:919 , HOH A:1003 , HOH A:1062 , HOH A:1140 , HOH A:1478 , ASP B:593 , GLY B:594
BINDING SITE FOR RESIDUE GOL A 801
02
AC2
SOFTWARE
ASP A:59 , LYS A:251 , HIS A:252 , TRP A:253 , LYS A:255 , HOH A:1248
BINDING SITE FOR RESIDUE GOL A 802
03
AC3
SOFTWARE
PHE A:125 , ARG A:175 , HOH A:953 , HOH A:1327
BINDING SITE FOR RESIDUE GOL A 803
04
AC4
SOFTWARE
TYR A:89 , LYS A:208 , ASP A:212 , ALA A:322 , ALA A:326 , ASN A:329 , GOL A:806 , HOH A:1279
BINDING SITE FOR RESIDUE GOL A 804
05
AC5
SOFTWARE
CYS A:87 , GLY A:90 , ALA A:91 , TYR A:228 , HOH A:1029 , HOH A:1039 , HOH A:1177
BINDING SITE FOR RESIDUE GOL A 805
06
AC6
SOFTWARE
ASN A:101 , GLN A:318 , GOL A:804
BINDING SITE FOR RESIDUE GOL A 806
07
AC7
SOFTWARE
ARG A:413 , GLU A:539 , ARG A:542 , HOH A:1111 , HOH A:1465
BINDING SITE FOR RESIDUE GOL A 807
08
AC8
SOFTWARE
GLU A:505 , LYS A:508 , HOH A:1483 , GLU B:438
BINDING SITE FOR RESIDUE ZN A 808
09
AC9
SOFTWARE
LYS A:47 , GLU A:635 , HIS A:665 , HOH A:1487
BINDING SITE FOR RESIDUE ZN A 809
10
BC1
SOFTWARE
ASP A:593 , GLY A:594 , HOH A:946 , THR B:598 , PHE B:600 , ILE B:639 , HOH B:942 , HOH B:1145 , HOH B:1150
BINDING SITE FOR RESIDUE GOL B 801
11
BC2
SOFTWARE
ASP B:128
BINDING SITE FOR RESIDUE GOL B 802
12
BC3
SOFTWARE
GLU A:438 , GLU B:505 , LYS B:508 , HOH B:1234
BINDING SITE FOR RESIDUE ZN B 803
13
BC4
SOFTWARE
LYS B:47 , GLU B:635 , HIS B:665 , HOH B:1321
BINDING SITE FOR RESIDUE ZN B 804
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(1, 2)
Info
All Exons
Exon 1.2a (C:1-6 | D:1-6)
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All Exon Boundaries
1: Boundary 1.1/1.2a
2: Boundary 1.2a/1.3
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000366667
1
ENSE00001442280
chr1:
230850043-230849832
212
ANGT_HUMAN
-
0
0
-
-
1.2a
ENST00000366667
2a
ENSE00001442279
chr1:
230846599-230845741
859
ANGT_HUMAN
1-286
286
2
C:1-6
D:1-6
6
6
1.3
ENST00000366667
3
ENSE00000921429
chr1:
230841946-230841679
268
ANGT_HUMAN
286-375
90
0
-
-
1.4
ENST00000366667
4
ENSE00000921430
chr1:
230840083-230839939
145
ANGT_HUMAN
375-423
49
0
-
-
1.5b
ENST00000366667
5b
ENSE00001920401
chr1:
230839075-230838269
807
ANGT_HUMAN
424-485
62
0
-
-
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SCOP Domains
(0, 0)
Info
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CATH Domains
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all CATH domains
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Pfam Domains
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all PFAM domains
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Chain D
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (247 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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