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3WNP
Asym. Unit
Info
Asym.Unit (240 KB)
Biol.Unit 1 (119 KB)
Biol.Unit 2 (120 KB)
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(1)
Title
:
D308A, F268V, D469Y, A513V, AND Y515S QUINTUPLE MUTANT OF BACILLUS CIRCULANS T-3040 CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE COMPLEXED WITH ISOMALTOUNDECAOSE
Authors
:
R. Suzuki, N. Suzuki, Z. Fujimoto, M. Momma, K. Kimura, S. Kitamura, A. K K. Funane
Date
:
10 Dec 13 (Deposition) - 05 Feb 14 (Release) - 04 Mar 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
C2 Type Immunoglobulin Fold, (Beta/Alpha)8-Barrel, Beta-Jelly Roll, Greek Key, Glycoside Hydrolase, Alpha-1, 6-Glucan, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Suzuki, N. Suzuki, Z. Fujimoto, M. Momma, K. Kimura, S. Kitamura, A. Kimura, K. Funane
Molecular Engineering Of Cycloisomaltooligosaccharide Glucanotransferase From Bacillus Circulans T-3040: Structural Determinants For The Reaction Product Size And Reactivity.
Biochem. J. 2015
(for further references see the
PDB file header
)
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Hetero Components
(6, 26)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: ALPHA-D-GLUCOSE (GLCa)
3b: ALPHA-D-GLUCOSE (GLCb)
3c: ALPHA-D-GLUCOSE (GLCc)
3d: ALPHA-D-GLUCOSE (GLCd)
3e: ALPHA-D-GLUCOSE (GLCe)
3f: ALPHA-D-GLUCOSE (GLCf)
4a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
4b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
6l: SULFATE ION (SO4l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
2
Ligand/Ion
BETA-D-GLUCOSE
2
CA
2
Ligand/Ion
CALCIUM ION
3
GLC
6
Ligand/Ion
ALPHA-D-GLUCOSE
4
MES
2
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
5
NA
2
Ligand/Ion
SODIUM ION
6
SO4
12
Ligand/Ion
SULFATE ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:424 , GLU A:426 , THR A:443 , GLY A:446 , ASP A:541
BINDING SITE FOR RESIDUE CA A 801
02
AC2
SOFTWARE
TYR A:388 , ASP A:664 , GLN A:666 , ASN A:669
BINDING SITE FOR RESIDUE NA A 802
03
AC3
SOFTWARE
ARG A:53 , ASN A:55 , LYS A:229
BINDING SITE FOR RESIDUE SO4 A 803
04
AC4
SOFTWARE
PRO A:113 , SER A:114
BINDING SITE FOR RESIDUE SO4 A 804
05
AC5
SOFTWARE
THR A:159 , ALA A:160
BINDING SITE FOR RESIDUE SO4 A 805
06
AC6
SOFTWARE
ASN A:345 , ARG A:348
BINDING SITE FOR RESIDUE SO4 A 806
07
AC7
SOFTWARE
ARG A:475 , TRP A:509 , LYS A:510 , HIS A:511
BINDING SITE FOR RESIDUE SO4 A 807
08
AC8
SOFTWARE
GLN A:169 , ASN A:574 , LYS A:594
BINDING SITE FOR RESIDUE SO4 A 808
09
AC9
SOFTWARE
ARG A:123 , GLN A:131 , GLY A:132 , LYS A:598 , ASP A:599 , SER A:703 , GLY A:704
BINDING SITE FOR RESIDUE MES A 809
10
BC1
SOFTWARE
GLU B:424 , GLU B:426 , THR B:443 , GLY B:446 , ASP B:541
BINDING SITE FOR RESIDUE CA B 801
11
BC2
SOFTWARE
TYR B:388 , ASP B:664 , GLN B:666 , ASN B:669
BINDING SITE FOR RESIDUE NA B 802
12
BC3
SOFTWARE
ARG B:53 , ASN B:55 , ASN B:227 , LYS B:229
BINDING SITE FOR RESIDUE SO4 B 803
13
BC4
SOFTWARE
THR B:159 , ALA B:160
BINDING SITE FOR RESIDUE SO4 B 804
14
BC5
SOFTWARE
ASN B:345 , ARG B:348
BINDING SITE FOR RESIDUE SO4 B 805
15
BC6
SOFTWARE
ARG B:475 , TRP B:509 , LYS B:510 , HIS B:511
BINDING SITE FOR RESIDUE SO4 B 806
16
BC7
SOFTWARE
GLN B:169 , ASN B:574 , LYS B:594
BINDING SITE FOR RESIDUE SO4 B 807
17
BC8
SOFTWARE
TYR B:530 , VAL B:535 , GLY B:536
BINDING SITE FOR RESIDUE SO4 B 808
18
BC9
SOFTWARE
ARG B:123 , GLN B:131 , GLY B:132 , LYS B:598 , ASP B:599 , ASN B:602 , SER B:703 , GLY B:704
BINDING SITE FOR RESIDUE MES B 809
19
CC1
SOFTWARE
TYR A:182 , ASP A:183 , MET A:185 , HIS A:188 , PHE A:207 , TYR A:233 , ALA A:308 , GLN A:309 , ASN A:354 , GLU A:380 , PHE A:501 , HIS A:579 , GLU A:580 , TYR A:581 , TYR A:582 , ASN A:584 , HOH A:1020
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 818 TO 821
20
CC2
SOFTWARE
TYR B:182 , ASP B:183 , HIS B:188 , PHE B:207 , TYR B:233 , MET B:235 , ALA B:308 , GLN B:309 , ASN B:354 , GLU B:380 , TYR B:412 , HIS B:579 , GLU B:580 , TYR B:581 , TYR B:582 , ASN B:584 , HOH B:955 , HOH B:969 , HOH B:970
BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 818 TO 821
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CBM6 (A:421-546,B:421-546|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CBM6
PS51175
CBM6 (carbohydrate binding type-6) domain profile.
CTA1_BACCI
421-546
748-871
2
A:421-546
B:421-546
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Protein & NOT Site
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Chain A
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (240 KB)
Header - Asym.Unit
Biol.Unit 1 (119 KB)
Header - Biol.Unit 1
Biol.Unit 2 (120 KB)
Header - Biol.Unit 2
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