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3WNO
Biol. Unit 2
Info
Asym.Unit (270 KB)
Biol.Unit 1 (133 KB)
Biol.Unit 2 (135 KB)
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(1)
Title
:
D308A MUTANT OF BACILLUS CIRCULANS T-3040 CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE COMPLEXED WITH CYCLOISOMALTOOCTAOSE
Authors
:
N. Suzuki, Z. Fujimoto, Y. M. Kim, M. Momma, N. Kishine, R. Suzuki, M. Kob A. Kimura, K. Funane
Date
:
10 Dec 13 (Deposition) - 05 Feb 14 (Release) - 04 Mar 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
C2 Type Immunoglobulin Fold, (Beta/Alpha)8-Barrel, Beta-Jelly Roll, Greek Key, Glycoside Hydrolase, Alpha-1, 6-Glucan, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Suzuki, Z. Fujimoto, Y. M. Kim, M. Momma, N. Kishine, R. Suzuki, S. Suzuki, S. Kitamura, M. Kobayashi, A. Kimura, K. Funane
Structural Elucidation Of The Cyclization Mechanism Of Alpha-1, 6-Glucan By Bacillus Circulans T-3040 Cycloisomaltooligosaccharide Glucanotransferase.
J. Biol. Chem. V. 289 12040 2014
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 31)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
3a: ALPHA-D-GLUCOSE (GLCa)
3aa: ALPHA-D-GLUCOSE (GLCaa)
3ab: ALPHA-D-GLUCOSE (GLCab)
3ac: ALPHA-D-GLUCOSE (GLCac)
3ad: ALPHA-D-GLUCOSE (GLCad)
3ae: ALPHA-D-GLUCOSE (GLCae)
3af: ALPHA-D-GLUCOSE (GLCaf)
3ag: ALPHA-D-GLUCOSE (GLCag)
3ah: ALPHA-D-GLUCOSE (GLCah)
3ai: ALPHA-D-GLUCOSE (GLCai)
3aj: ALPHA-D-GLUCOSE (GLCaj)
3b: ALPHA-D-GLUCOSE (GLCb)
3c: ALPHA-D-GLUCOSE (GLCc)
3d: ALPHA-D-GLUCOSE (GLCd)
3e: ALPHA-D-GLUCOSE (GLCe)
3f: ALPHA-D-GLUCOSE (GLCf)
3g: ALPHA-D-GLUCOSE (GLCg)
3h: ALPHA-D-GLUCOSE (GLCh)
3i: ALPHA-D-GLUCOSE (GLCi)
3j: ALPHA-D-GLUCOSE (GLCj)
3k: ALPHA-D-GLUCOSE (GLCk)
3l: ALPHA-D-GLUCOSE (GLCl)
3m: ALPHA-D-GLUCOSE (GLCm)
3n: ALPHA-D-GLUCOSE (GLCn)
3o: ALPHA-D-GLUCOSE (GLCo)
3p: ALPHA-D-GLUCOSE (GLCp)
3q: ALPHA-D-GLUCOSE (GLCq)
3r: ALPHA-D-GLUCOSE (GLCr)
3s: ALPHA-D-GLUCOSE (GLCs)
3t: ALPHA-D-GLUCOSE (GLCt)
3u: ALPHA-D-GLUCOSE (GLCu)
3v: ALPHA-D-GLUCOSE (GLCv)
3w: ALPHA-D-GLUCOSE (GLCw)
3x: ALPHA-D-GLUCOSE (GLCx)
3y: ALPHA-D-GLUCOSE (GLCy)
3z: ALPHA-D-GLUCOSE (GLCz)
4a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
4b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
6l: SULFATE ION (SO4l)
6m: SULFATE ION (SO4m)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
3
GLC
20
Ligand/Ion
ALPHA-D-GLUCOSE
4
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
5
NA
-1
Ligand/Ion
SODIUM ION
6
SO4
6
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC4 (SOFTWARE)
02: BC1 (SOFTWARE)
03: BC2 (SOFTWARE)
04: BC7 (SOFTWARE)
05: BC8 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC1 (SOFTWARE)
08: CC2 (SOFTWARE)
09: CC3 (SOFTWARE)
10: CC4 (SOFTWARE)
11: CC5 (SOFTWARE)
12: CC6 (SOFTWARE)
13: CC7 (SOFTWARE)
14: CC8 (SOFTWARE)
15: CC9 (SOFTWARE)
16: DC1 (SOFTWARE)
17: DC2 (SOFTWARE)
18: DC4 (SOFTWARE)
19: DC5 (SOFTWARE)
20: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
PRO A:113 , SER A:114 , HOH A:1161 , HOH A:1502 , HOH A:1591 , ASN B:432 , HOH B:1145 , HOH B:1369
BINDING SITE FOR RESIDUE SO4 A 804
02
BC1
SOFTWARE
GLU A:241 , ASN A:242 , TYR A:243 , TYR A:276 , HOH A:1370 , SER B:504 , SER B:505
BINDING SITE FOR RESIDUE EDO A 810
03
BC2
SOFTWARE
ARG A:187 , GLU A:241 , ASN A:242 , PRO A:245 , HOH A:1578 , GLY B:197
BINDING SITE FOR RESIDUE EDO A 811
04
BC7
SOFTWARE
GLU B:424 , GLU B:426 , THR B:443 , GLY B:446 , ASP B:541
BINDING SITE FOR RESIDUE CA B 809
05
BC8
SOFTWARE
ASP B:664 , GLN B:666 , ASN B:669 , HOH B:1319 , HOH B:1327 , HOH B:1346
BINDING SITE FOR RESIDUE NA B 810
06
BC9
SOFTWARE
ARG B:53 , ASN B:55 , LYS B:229 , HOH B:1033 , HOH B:1398 , HOH B:1402
BINDING SITE FOR RESIDUE SO4 B 811
07
CC1
SOFTWARE
THR B:159 , ALA B:160 , HOH B:1043 , HOH B:1305 , HOH B:1482
BINDING SITE FOR RESIDUE SO4 B 812
08
CC2
SOFTWARE
ASN B:345 , ARG B:348 , HOH B:1423
BINDING SITE FOR RESIDUE SO4 B 813
09
CC3
SOFTWARE
ARG B:475 , HIS B:511 , HOH B:907
BINDING SITE FOR RESIDUE SO4 B 814
10
CC4
SOFTWARE
GLN B:169 , ASN B:574 , LYS B:594 , HOH B:1494
BINDING SITE FOR RESIDUE SO4 B 815
11
CC5
SOFTWARE
TYR B:530 , VAL B:535 , GLY B:536 , GLC B:830 , HOH B:1085 , HOH B:1282 , HOH B:1471
BINDING SITE FOR RESIDUE SO4 B 816
12
CC6
SOFTWARE
SER B:114 , HOH B:1219
BINDING SITE FOR RESIDUE EDO B 817
13
CC7
SOFTWARE
GLU B:153 , PHE B:154 , GLU B:155 , ARG B:209 , GLU B:210 , HOH B:1492
BINDING SITE FOR RESIDUE EDO B 818
14
CC8
SOFTWARE
PHE B:207 , TYR B:581 , GLC B:829 , HOH B:1514
BINDING SITE FOR RESIDUE EDO B 819
15
CC9
SOFTWARE
ALA B:440 , GLY B:441 , TYR B:442
BINDING SITE FOR RESIDUE EDO B 820
16
DC1
SOFTWARE
ARG B:123 , GLN B:131 , GLY B:132 , ASN B:595 , LYS B:598 , ASP B:599 , ASN B:602 , SER B:703 , GLY B:704
BINDING SITE FOR RESIDUE MES B 821
17
DC2
SOFTWARE
TYR A:182 , ASP A:183 , HIS A:188 , PHE A:207 , TYR A:233 , MET A:235 , VAL A:266 , ASP A:267 , PHE A:268 , GLN A:309 , MET A:310 , GLN A:312 , ARG A:313 , ASN A:354 , VAL A:356 , ASP A:357 , GLU A:380 , TRP A:382 , HIS A:579 , GLU A:580 , TYR A:581 , TYR A:582 , HOH A:1007 , HOH A:1011 , HOH A:1020 , HOH A:1028 , HOH A:1039 , HOH A:1081 , HOH A:1088 , HOH A:1100 , HOH A:1146 , HOH A:1184 , HOH A:1193 , HOH A:1261 , HOH A:1304 , HOH A:1316 , HOH A:1362 , HOH A:1411 , HOH A:1430 , HOH A:1516 , ASN B:262 , GLC B:803 , GLC B:804 , HOH B:1428
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 816 TO 823
18
DC4
SOFTWARE
TYR A:383 , ASP A:386 , THR A:508 , LYS A:510 , GLC A:820 , GLC A:821 , HOH A:1269 , GLU B:241 , ASN B:242 , TYR B:243 , SER B:244 , PRO B:250 , TYR B:255 , SER B:259 , HIS B:260 , THR B:261 , ASN B:262 , TYR B:274 , TYR B:276 , TYR B:319 , HOH B:902 , HOH B:903 , HOH B:904 , HOH B:908 , HOH B:913 , HOH B:1058 , HOH B:1076 , HOH B:1153 , HOH B:1221 , HOH B:1411
BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 801 TO 808
19
DC5
SOFTWARE
GLU A:256 , ASP A:257 , ASN A:262 , ASN A:315 , HOH A:1052 , HOH A:1601 , TYR B:182 , ASP B:183 , HIS B:188 , PHE B:207 , TYR B:233 , MET B:235 , VAL B:266 , ASP B:267 , PHE B:268 , GLN B:309 , MET B:310 , GLN B:312 , ARG B:313 , ASN B:354 , VAL B:356 , ASP B:357 , GLU B:380 , TRP B:382 , HIS B:579 , GLU B:580 , TYR B:581 , TYR B:582 , EDO B:819 , HOH B:925 , HOH B:985 , HOH B:986 , HOH B:1000 , HOH B:1013 , HOH B:1056 , HOH B:1132 , HOH B:1163 , HOH B:1174 , HOH B:1243 , HOH B:1256 , HOH B:1268 , HOH B:1292 , HOH B:1295 , HOH B:1321 , HOH B:1382 , HOH B:1399 , HOH B:1428 , HOH B:1488
BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 822 TO 829
20
DC6
SOFTWARE
HIS B:439 , ALA B:452 , THR B:480 , TRP B:506 , ASN B:539 , SO4 B:816 , HOH B:1189 , HOH B:1211 , HOH B:1237 , HOH B:1347 , HOH B:1401 , HOH B:1451 , HOH B:1471
BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 830 TO 833
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CBM6 (B:421-546|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CBM6
PS51175
CBM6 (carbohydrate binding type-6) domain profile.
CTA1_BACCI
421-546
748-871
1
-
B:421-546
-
[
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Exons
(0, 0)
Info
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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