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3WNO
Biol. Unit 1
Info
Asym.Unit (270 KB)
Biol.Unit 1 (133 KB)
Biol.Unit 2 (135 KB)
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(1)
Title
:
D308A MUTANT OF BACILLUS CIRCULANS T-3040 CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE COMPLEXED WITH CYCLOISOMALTOOCTAOSE
Authors
:
N. Suzuki, Z. Fujimoto, Y. M. Kim, M. Momma, N. Kishine, R. Suzuki, M. Kob A. Kimura, K. Funane
Date
:
10 Dec 13 (Deposition) - 05 Feb 14 (Release) - 04 Mar 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
C2 Type Immunoglobulin Fold, (Beta/Alpha)8-Barrel, Beta-Jelly Roll, Greek Key, Glycoside Hydrolase, Alpha-1, 6-Glucan, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Suzuki, Z. Fujimoto, Y. M. Kim, M. Momma, N. Kishine, R. Suzuki, S. Suzuki, S. Kitamura, M. Kobayashi, A. Kimura, K. Funane
Structural Elucidation Of The Cyclization Mechanism Of Alpha-1, 6-Glucan By Bacillus Circulans T-3040 Cycloisomaltooligosaccharide Glucanotransferase.
J. Biol. Chem. V. 289 12040 2014
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 29)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
3a: ALPHA-D-GLUCOSE (GLCa)
3aa: ALPHA-D-GLUCOSE (GLCaa)
3ab: ALPHA-D-GLUCOSE (GLCab)
3ac: ALPHA-D-GLUCOSE (GLCac)
3ad: ALPHA-D-GLUCOSE (GLCad)
3ae: ALPHA-D-GLUCOSE (GLCae)
3af: ALPHA-D-GLUCOSE (GLCaf)
3ag: ALPHA-D-GLUCOSE (GLCag)
3ah: ALPHA-D-GLUCOSE (GLCah)
3ai: ALPHA-D-GLUCOSE (GLCai)
3aj: ALPHA-D-GLUCOSE (GLCaj)
3b: ALPHA-D-GLUCOSE (GLCb)
3c: ALPHA-D-GLUCOSE (GLCc)
3d: ALPHA-D-GLUCOSE (GLCd)
3e: ALPHA-D-GLUCOSE (GLCe)
3f: ALPHA-D-GLUCOSE (GLCf)
3g: ALPHA-D-GLUCOSE (GLCg)
3h: ALPHA-D-GLUCOSE (GLCh)
3i: ALPHA-D-GLUCOSE (GLCi)
3j: ALPHA-D-GLUCOSE (GLCj)
3k: ALPHA-D-GLUCOSE (GLCk)
3l: ALPHA-D-GLUCOSE (GLCl)
3m: ALPHA-D-GLUCOSE (GLCm)
3n: ALPHA-D-GLUCOSE (GLCn)
3o: ALPHA-D-GLUCOSE (GLCo)
3p: ALPHA-D-GLUCOSE (GLCp)
3q: ALPHA-D-GLUCOSE (GLCq)
3r: ALPHA-D-GLUCOSE (GLCr)
3s: ALPHA-D-GLUCOSE (GLCs)
3t: ALPHA-D-GLUCOSE (GLCt)
3u: ALPHA-D-GLUCOSE (GLCu)
3v: ALPHA-D-GLUCOSE (GLCv)
3w: ALPHA-D-GLUCOSE (GLCw)
3x: ALPHA-D-GLUCOSE (GLCx)
3y: ALPHA-D-GLUCOSE (GLCy)
3z: ALPHA-D-GLUCOSE (GLCz)
4a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
4b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
6l: SULFATE ION (SO4l)
6m: SULFATE ION (SO4m)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
3
GLC
16
Ligand/Ion
ALPHA-D-GLUCOSE
4
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
5
NA
-1
Ligand/Ion
SODIUM ION
6
SO4
7
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: DC2 (SOFTWARE)
17: DC3 (SOFTWARE)
18: DC4 (SOFTWARE)
19: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:424 , GLU A:426 , THR A:443 , GLY A:446 , ASP A:541
BINDING SITE FOR RESIDUE CA A 801
02
AC2
SOFTWARE
ASP A:664 , GLN A:666 , ASN A:669 , HOH A:1202 , HOH A:1391 , HOH A:1403
BINDING SITE FOR RESIDUE NA A 802
03
AC3
SOFTWARE
ARG A:53 , ASN A:55 , LYS A:229 , HOH A:1278 , HOH A:1349 , HOH A:1415
BINDING SITE FOR RESIDUE SO4 A 803
04
AC4
SOFTWARE
PRO A:113 , SER A:114 , HOH A:1161 , HOH A:1502 , HOH A:1591 , ASN B:432 , HOH B:1145 , HOH B:1369
BINDING SITE FOR RESIDUE SO4 A 804
05
AC5
SOFTWARE
THR A:159 , ALA A:160 , HOH A:1351 , HOH A:1477
BINDING SITE FOR RESIDUE SO4 A 805
06
AC6
SOFTWARE
ASN A:345 , ARG A:348
BINDING SITE FOR RESIDUE SO4 A 806
07
AC7
SOFTWARE
ALA A:416 , ARG A:475 , TRP A:509 , HIS A:511 , HOH A:1438
BINDING SITE FOR RESIDUE SO4 A 807
08
AC8
SOFTWARE
GLN A:169 , ASN A:574 , LYS A:594
BINDING SITE FOR RESIDUE SO4 A 808
09
AC9
SOFTWARE
TYR A:530 , VAL A:535 , GLY A:536 , GLC A:825
BINDING SITE FOR RESIDUE SO4 A 809
10
BC1
SOFTWARE
GLU A:241 , ASN A:242 , TYR A:243 , TYR A:276 , HOH A:1370 , SER B:504 , SER B:505
BINDING SITE FOR RESIDUE EDO A 810
11
BC2
SOFTWARE
ARG A:187 , GLU A:241 , ASN A:242 , PRO A:245 , HOH A:1578 , GLY B:197
BINDING SITE FOR RESIDUE EDO A 811
12
BC3
SOFTWARE
GLU A:153 , PHE A:154 , GLU A:155 , ARG A:209 , GLU A:210 , ILE A:211 , HOH A:1586
BINDING SITE FOR RESIDUE EDO A 812
13
BC4
SOFTWARE
GLN A:217 , ASP A:221 , ALA A:300 , GLY A:301 , HOH A:1252 , HOH A:1309
BINDING SITE FOR RESIDUE EDO A 813
14
BC5
SOFTWARE
ALA A:440 , GLY A:441 , TYR A:442
BINDING SITE FOR RESIDUE EDO A 814
15
BC6
SOFTWARE
ARG A:123 , GLN A:131 , GLY A:132 , ASN A:595 , LYS A:598 , ASP A:599 , ASN A:602 , SER A:703 , GLY A:704 , HOH A:1422
BINDING SITE FOR RESIDUE MES A 815
16
DC2
SOFTWARE
TYR A:182 , ASP A:183 , HIS A:188 , PHE A:207 , TYR A:233 , MET A:235 , VAL A:266 , ASP A:267 , PHE A:268 , GLN A:309 , MET A:310 , GLN A:312 , ARG A:313 , ASN A:354 , VAL A:356 , ASP A:357 , GLU A:380 , TRP A:382 , HIS A:579 , GLU A:580 , TYR A:581 , TYR A:582 , HOH A:1007 , HOH A:1011 , HOH A:1020 , HOH A:1028 , HOH A:1039 , HOH A:1081 , HOH A:1088 , HOH A:1100 , HOH A:1146 , HOH A:1184 , HOH A:1193 , HOH A:1261 , HOH A:1304 , HOH A:1316 , HOH A:1362 , HOH A:1411 , HOH A:1430 , HOH A:1516 , ASN B:262 , GLC B:803 , GLC B:804 , HOH B:1428
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 816 TO 823
17
DC3
SOFTWARE
HIS A:439 , GLN A:450 , ALA A:452 , ASN A:479 , THR A:480 , GLY A:481 , ASN A:539 , THR A:716 , SO4 A:809 , HOH A:1461 , HOH A:1471 , HOH A:1473
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 824 TO 831
18
DC4
SOFTWARE
TYR A:383 , ASP A:386 , THR A:508 , LYS A:510 , GLC A:820 , GLC A:821 , HOH A:1269 , GLU B:241 , ASN B:242 , TYR B:243 , SER B:244 , PRO B:250 , TYR B:255 , SER B:259 , HIS B:260 , THR B:261 , ASN B:262 , TYR B:274 , TYR B:276 , TYR B:319 , HOH B:902 , HOH B:903 , HOH B:904 , HOH B:908 , HOH B:913 , HOH B:1058 , HOH B:1076 , HOH B:1153 , HOH B:1221 , HOH B:1411
BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 801 TO 808
19
DC5
SOFTWARE
GLU A:256 , ASP A:257 , ASN A:262 , ASN A:315 , HOH A:1052 , HOH A:1601 , TYR B:182 , ASP B:183 , HIS B:188 , PHE B:207 , TYR B:233 , MET B:235 , VAL B:266 , ASP B:267 , PHE B:268 , GLN B:309 , MET B:310 , GLN B:312 , ARG B:313 , ASN B:354 , VAL B:356 , ASP B:357 , GLU B:380 , TRP B:382 , HIS B:579 , GLU B:580 , TYR B:581 , TYR B:582 , EDO B:819 , HOH B:925 , HOH B:985 , HOH B:986 , HOH B:1000 , HOH B:1013 , HOH B:1056 , HOH B:1132 , HOH B:1163 , HOH B:1174 , HOH B:1243 , HOH B:1256 , HOH B:1268 , HOH B:1292 , HOH B:1295 , HOH B:1321 , HOH B:1382 , HOH B:1399 , HOH B:1428 , HOH B:1488
BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 822 TO 829
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CBM6 (A:421-546)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CBM6
PS51175
CBM6 (carbohydrate binding type-6) domain profile.
CTA1_BACCI
421-546
748-871
1
A:421-546
-
-
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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all PFAM domains
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Sorry, no Info available
[
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Protein & NOT Site
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Asymmetric Unit 1
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Asym.Unit (270 KB)
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