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Biol. Unit 2
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Asym.Unit (250 KB)
Biol.Unit 1 (123 KB)
Biol.Unit 2 (125 KB)
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(1)
Title
:
D308A MUTANT OF BACILLUS CIRCULANS T-3040 CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE COMPLEXED WITH ISOMALTOOCTAOSE
Authors
:
N. Suzuki, Z. Fujimoto, Y. M. Kim, M. Momma, N. Kishine, R. Suzuki, S. Suz S. Kitamura, M. Kobayashi, A. Kimura, K. Funane
Date
:
10 Dec 13 (Deposition) - 05 Feb 14 (Release) - 04 Mar 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
C2 Type Immunoglobulin Fold, (Beta/Alpha)8-Barrel, Beta-Jelly Roll, Greek Key, Glycoside Hydrolase, Alpha-1, 6-Glucan, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Suzuki, Z. Fujimoto, Y. M. Kim, M. Momma, N. Kishine, R. Suzuki, S. Suzuki, S. Kitamura, M. Kobayashi, A. Kimura, K. Funane
Structural Elucidation Of The Cyclization Mechanism Of Alpha-1, 6-Glucan By Bacillus Circulans T-3040 Cycloisomaltooligosaccharide Glucanotransferase.
J. Biol. Chem. V. 289 12040 2014
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 19)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: ALPHA-D-GLUCOSE (GLCa)
3b: ALPHA-D-GLUCOSE (GLCb)
3c: ALPHA-D-GLUCOSE (GLCc)
3d: ALPHA-D-GLUCOSE (GLCd)
3e: ALPHA-D-GLUCOSE (GLCe)
3f: ALPHA-D-GLUCOSE (GLCf)
3g: ALPHA-D-GLUCOSE (GLCg)
3h: ALPHA-D-GLUCOSE (GLCh)
3i: ALPHA-D-GLUCOSE (GLCi)
3j: ALPHA-D-GLUCOSE (GLCj)
3k: ALPHA-D-GLUCOSE (GLCk)
3l: ALPHA-D-GLUCOSE (GLCl)
3m: ALPHA-D-GLUCOSE (GLCm)
3n: ALPHA-D-GLUCOSE (GLCn)
3o: ALPHA-D-GLUCOSE (GLCo)
3p: ALPHA-D-GLUCOSE (GLCp)
3q: ALPHA-D-GLUCOSE (GLCq)
3r: ALPHA-D-GLUCOSE (GLCr)
3s: ALPHA-D-GLUCOSE (GLCs)
3t: ALPHA-D-GLUCOSE (GLCt)
3u: ALPHA-D-GLUCOSE (GLCu)
3v: ALPHA-D-GLUCOSE (GLCv)
3w: ALPHA-D-GLUCOSE (GLCw)
4a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
4b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
GLC
12
Ligand/Ion
ALPHA-D-GLUCOSE
4
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
5
NA
-1
Ligand/Ion
SODIUM ION
6
SO4
5
Ligand/Ion
SULFATE ION
[
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Sites
(10, 10)
Info
All Sites
01: BC1 (SOFTWARE)
02: BC2 (SOFTWARE)
03: BC3 (SOFTWARE)
04: BC4 (SOFTWARE)
05: BC5 (SOFTWARE)
06: BC6 (SOFTWARE)
07: BC7 (SOFTWARE)
08: BC8 (SOFTWARE)
09: CC2 (SOFTWARE)
10: CC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
BC1
SOFTWARE
GLU B:424 , GLU B:426 , THR B:443 , GLY B:446 , ASP B:541
BINDING SITE FOR RESIDUE CA B 801
02
BC2
SOFTWARE
ASP B:664 , GLN B:666 , ASN B:669 , HOH B:1091 , HOH B:1165 , HOH B:1166
BINDING SITE FOR RESIDUE NA B 802
03
BC3
SOFTWARE
ARG B:53 , ASN B:55 , LYS B:229 , HOH B:1106
BINDING SITE FOR RESIDUE SO4 B 803
04
BC4
SOFTWARE
THR B:159 , ALA B:160 , HOH B:991 , HOH B:1116
BINDING SITE FOR RESIDUE SO4 B 804
05
BC5
SOFTWARE
ASN B:345 , ARG B:348
BINDING SITE FOR RESIDUE SO4 B 805
06
BC6
SOFTWARE
ARG B:475 , TRP B:509 , LYS B:510 , HIS B:511
BINDING SITE FOR RESIDUE SO4 B 806
07
BC7
SOFTWARE
TYR B:530 , GLY B:536 , GLC B:822 , HOH B:1013 , HOH B:1080
BINDING SITE FOR RESIDUE SO4 B 807
08
BC8
SOFTWARE
ARG B:123 , GLN B:131 , GLY B:132 , LYS B:598 , ASP B:599 , ASN B:602 , SER B:703 , GLY B:704
BINDING SITE FOR RESIDUE MES B 808
09
CC2
SOFTWARE
TYR B:182 , ASP B:183 , MET B:185 , HIS B:188 , PHE B:207 , TYR B:233 , MET B:235 , PHE B:268 , GLN B:309 , ASN B:354 , GLU B:380 , ASN B:483 , GLN B:496 , LYS B:497 , TYR B:499 , PHE B:501 , ASP B:512 , ALA B:513 , TRP B:514 , TYR B:515 , HIS B:579 , GLU B:580 , TYR B:581 , TYR B:582 , ASN B:584 , HOH B:910 , HOH B:913 , HOH B:954 , HOH B:970 , HOH B:1057 , HOH B:1075 , HOH B:1124 , HOH B:1127 , HOH B:1133 , HOH B:1134 , HOH B:1144 , HOH B:1145
BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 811 TO 818
10
CC3
SOFTWARE
HIS B:439 , GLN B:450 , ALA B:452 , THR B:480 , TRP B:506 , ASN B:539 , SO4 B:807 , HOH B:1071
BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 821 TO 825
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CBM6 (B:421-546|-)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CBM6
PS51175
CBM6 (carbohydrate binding type-6) domain profile.
CTA1_BACCI
421-546
748-871
1
-
B:421-546
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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