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3WNM
Asym. Unit
Info
Asym.Unit (131 KB)
Biol.Unit 1 (125 KB)
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(1)
Title
:
D308A MUTANT OF BACILLUS CIRCULANS T-3040 CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE COMPLEXED WITH ISOMALTOHEPTAOSE
Authors
:
N. Suzuki, Z. Fujimoto, Y. M. Kim, M. Momma, N. Kishine, R. Suzuki, S. Suz S. Kitamura, M. Kobayashi, A. Kimura, K. Funane
Date
:
10 Dec 13 (Deposition) - 05 Feb 14 (Release) - 04 Mar 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
C2 Type Immunoglobulin Fold, (Beta/Alpha)8-Barrel, Beta-Jelly Roll, Greek Key, Glycoside Hydrolase, Alpha-1, 6-Glucan, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Suzuki, Z. Fujimoto, Y. M. Kim, M. Momma, N. Kishine, R. Suzuki, S. Suzuki, S. Kitamura, M. Kobayashi, A. Kimura, K. Funane
Structural Elucidation Of The Cyclization Mechanism Of Alpha-1, 6-Glucan By Bacillus Circulans T-3040 Cycloisomaltooligosaccharide Glucanotransferase.
J. Biol. Chem. V. 289 12040 2014
(for further references see the
PDB file header
)
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Hetero Components
(6, 22)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
2a: CALCIUM ION (CAa)
3a: ALPHA-D-GLUCOSE (GLCa)
3b: ALPHA-D-GLUCOSE (GLCb)
3c: ALPHA-D-GLUCOSE (GLCc)
3d: ALPHA-D-GLUCOSE (GLCd)
3e: ALPHA-D-GLUCOSE (GLCe)
3f: ALPHA-D-GLUCOSE (GLCf)
3g: ALPHA-D-GLUCOSE (GLCg)
3h: ALPHA-D-GLUCOSE (GLCh)
3i: ALPHA-D-GLUCOSE (GLCi)
3j: ALPHA-D-GLUCOSE (GLCj)
4a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
5a: SODIUM ION (NAa)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
2
CA
1
Ligand/Ion
CALCIUM ION
3
GLC
10
Ligand/Ion
ALPHA-D-GLUCOSE
4
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
5
NA
1
Ligand/Ion
SODIUM ION
6
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:424 , GLU A:426 , THR A:443 , GLY A:446 , ASP A:541
BINDING SITE FOR RESIDUE CA A 801
02
AC2
SOFTWARE
ASP A:664 , GLN A:666 , ASN A:669 , HOH A:1115 , HOH A:1128
BINDING SITE FOR RESIDUE NA A 802
03
AC3
SOFTWARE
ARG A:53 , ASN A:55 , LYS A:229 , HOH A:1122 , HOH A:1332
BINDING SITE FOR RESIDUE SO4 A 803
04
AC4
SOFTWARE
PRO A:113 , SER A:114 , HOH A:1158
BINDING SITE FOR RESIDUE SO4 A 804
05
AC5
SOFTWARE
THR A:159 , ALA A:160 , HOH A:1230
BINDING SITE FOR RESIDUE SO4 A 805
06
AC6
SOFTWARE
ASN A:345 , ARG A:348 , HOH A:1143 , HOH A:1155
BINDING SITE FOR RESIDUE SO4 A 806
07
AC7
SOFTWARE
ALA A:416 , ARG A:475 , TRP A:509 , HIS A:511
BINDING SITE FOR RESIDUE SO4 A 807
08
AC8
SOFTWARE
GLN A:169 , ASN A:574 , LYS A:594
BINDING SITE FOR RESIDUE SO4 A 808
09
AC9
SOFTWARE
TRP A:186 , LYS A:193 , LEU A:204 , HOH A:1047 , HOH A:1119 , HOH A:1181
BINDING SITE FOR RESIDUE SO4 A 809
10
BC1
SOFTWARE
TYR A:530 , VAL A:535 , GLY A:536 , GLC A:819 , HOH A:1346
BINDING SITE FOR RESIDUE SO4 A 810
11
BC2
SOFTWARE
ARG A:123 , GLN A:131 , GLY A:132 , LYS A:598 , ASP A:599 , ASN A:602 , SER A:703 , GLY A:704
BINDING SITE FOR RESIDUE MES A 811
12
BC3
SOFTWARE
TYR A:182 , ASP A:183 , MET A:185 , HIS A:188 , PHE A:207 , TYR A:233 , MET A:235 , GLU A:256 , ASN A:262 , ASP A:267 , PHE A:268 , ALA A:308 , GLN A:309 , MET A:310 , GLN A:312 , ARG A:313 , ASN A:354 , ASP A:357 , GLU A:380 , TRP A:382 , GLU A:580 , TYR A:581 , TYR A:582 , HOH A:1028 , HOH A:1029 , HOH A:1052 , HOH A:1056 , HOH A:1082 , HOH A:1152 , HOH A:1156 , HOH A:1172 , HOH A:1223 , HOH A:1224 , HOH A:1227 , HOH A:1264 , HOH A:1341
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 812 TO 818
13
BC4
SOFTWARE
HIS A:439 , GLN A:450 , ALA A:452 , THR A:480 , TRP A:506 , ALA A:537 , ASN A:539 , SO4 A:810 , HOH A:1290 , HOH A:1346
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 819 TO 822
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CBM6 (A:421-546|-)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CBM6
PS51175
CBM6 (carbohydrate binding type-6) domain profile.
CTA1_BACCI
421-546
748-871
1
A:421-546
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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