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3WNJ
Biol. Unit 1
Info
Asym.Unit (131 KB)
Biol.Unit 1 (368 KB)
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(1)
Title
:
1.20 A RESOLUTION CRYSTAL STRUCTURE OF DIOXYGEN BOUND COPPER-CONTAINING NITRITE REDUCTASE FROM GEOBACILLUS THERMODENITRIFICANS
Authors
:
Y. Fukuda, T. Inoue
Date
:
10 Dec 13 (Deposition) - 10 Dec 14 (Release) - 10 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Greek Key Beta Barrel, Dissimilatory Nitrite Reductase, Periplasm- Like Space, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Fukuda, T. Inoue
Crystallographic Evidence For Side-On Dioxygen Trapped On Type 2 Copper In Copper-Containing Nitrite Reductase
To Be Published
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Hetero Components
(5, 33)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
2e: COPPER (II) ION (CUe)
2f: COPPER (II) ION (CUf)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
4a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
5a: SODIUM ION (NAa)
6a: OXYGEN MOLECULE (OXYa)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
7c: SULFATE ION (SO4c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACY
12
Ligand/Ion
ACETIC ACID
2
CU
-1
Ligand/Ion
COPPER (II) ION
3
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
4
MPD
3
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
5
NA
-1
Ligand/Ion
SODIUM ION
6
OXY
3
Ligand/Ion
OXYGEN MOLECULE
7
SO4
9
Ligand/Ion
SULFATE ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:95 , CYS A:135 , HIS A:143 , MET A:148
BINDING SITE FOR RESIDUE CU A 401
02
AC2
SOFTWARE
HIS A:100 , HIS A:134 , HIS A:294 , OXY A:408 , HOH A:821 , HOH A:856
BINDING SITE FOR RESIDUE CU A 402
03
AC3
SOFTWARE
HIS A:42 , GLU A:53 , HIS A:83 , HOH A:704 , HOH A:800
BINDING SITE FOR RESIDUE CU A 403
04
AC4
SOFTWARE
HIS A:39
BINDING SITE FOR RESIDUE CU A 404
05
AC5
SOFTWARE
GLU A:239 , HOH A:628 , HOH A:770 , HOH A:813 , HOH A:814 , HOH A:853
BINDING SITE FOR RESIDUE CU A 405
06
AC6
SOFTWARE
ASP A:167 , HOH A:693 , HOH A:741 , HOH A:806 , HOH A:843
BINDING SITE FOR RESIDUE CU A 406
07
AC7
SOFTWARE
ASP A:40 , HOH A:815 , HOH A:835
BINDING SITE FOR RESIDUE NA A 407
08
AC8
SOFTWARE
ASP A:98 , HIS A:100 , HIS A:134 , HIS A:244 , VAL A:246 , HIS A:294 , PHE A:296 , CU A:402 , HOH A:783 , HOH A:821 , HOH A:856
BINDING SITE FOR RESIDUE OXY A 408
09
AC9
SOFTWARE
ASP A:163 , VAL A:166 , ASP A:167 , ARG A:168 , GLU A:169 , ARG A:229 , HOH A:719 , HOH A:803
BINDING SITE FOR RESIDUE MPD A 409
10
BC1
SOFTWARE
LYS A:138 , PRO A:139 , GLN A:300 , HOH A:560
BINDING SITE FOR RESIDUE EDO A 410
11
BC2
SOFTWARE
ASN A:158 , GLY A:159 , TYR A:160 , ASP A:163 , LYS A:164 , HOH A:724 , HOH A:778
BINDING SITE FOR RESIDUE EDO A 411
12
BC3
SOFTWARE
HIS A:262 , LEU A:263 , HOH A:750
BINDING SITE FOR RESIDUE SO4 A 412
13
BC4
SOFTWARE
MET A:270 , HOH A:850
BINDING SITE FOR RESIDUE SO4 A 413
14
BC5
SOFTWARE
LYS A:22 , GLY A:23 , LYS A:61 , HOH A:683 , HOH A:852
BINDING SITE FOR RESIDUE SO4 A 414
15
BC6
SOFTWARE
PRO A:290 , HOH A:716 , HOH A:783 , HOH A:857
BINDING SITE FOR RESIDUE ACY A 415
16
BC7
SOFTWARE
ASP A:55 , LYS A:56 , THR A:212 , PHE A:213 , HOH A:583
BINDING SITE FOR RESIDUE ACY A 416
17
BC8
SOFTWARE
LYS A:127 , PRO A:128 , ASN A:258 , ASN A:260 , HOH A:572 , HOH A:754 , HOH A:804 , HOH A:805
BINDING SITE FOR RESIDUE ACY A 417
18
BC9
SOFTWARE
ARG A:168 , LYS A:223 , THR A:312 , GLU A:314 , HOH A:840 , HOH A:841
BINDING SITE FOR RESIDUE ACY A 418
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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Asym.Unit (131 KB)
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Header - Biol.Unit 1
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