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Asym. Unit
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Asym.Unit (56 KB)
Biol.Unit 1 (50 KB)
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(1)
Title
:
CYCLIC HEXAPEPTIDE PKIDNP IN COMPLEX WITH HIV-1 INTEGRASE
Authors
:
J. Wielens, D. K. Chalmers, M. W. Parker
Date
:
09 Dec 13 (Deposition) - 25 Dec 13 (Release) - 25 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Dna Integration, Aids, Integrase, Endonuclease, Dna Binding, Viral Protein, Ledgf, Lens Epithelium-Derived Growth Factor, Rnaseh, Poly Nucleotidyl Transferase, Viral Protein-Peptide Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. E. Northfield, J. Wielens, S. J. Headey, M. Mulcair, M. J. Scanlon, M. W. Parker, P. E. Thompson, D. K. Chalmers
Hexapeptide Mimetics Of Ledgf In Complex With Hiv-1 Integrase
To Be Published
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: D-PROLINE (DPRa)
3b: D-PROLINE (DPRb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CD
4
Ligand/Ion
CADMIUM ION
2
CL
2
Ligand/Ion
CHLORIDE ION
3
DPR
2
Mod. Amino Acid
D-PROLINE
4
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:65 , HIS A:67 , GLU A:92 , ASP B:131
BINDING SITE FOR RESIDUE CD A 1001
02
AC2
SOFTWARE
CYS A:65 , GLU A:92 , ASP A:116 , CL A:1003 , HOH A:1101 , HOH B:408
BINDING SITE FOR RESIDUE CD A 1002
03
AC3
SOFTWARE
CYS A:65 , ASP A:116 , ASN A:120 , CD A:1002
BINDING SITE FOR RESIDUE CL A 1003
04
AC4
SOFTWARE
LYS A:71 , ARG A:166 , GLU A:170 , HIS A:171 , LEU A:172 , HOH A:1117 , HOH A:1127
BINDING SITE FOR RESIDUE SO4 A 1004
05
AC5
SOFTWARE
THR A:66 , HIS A:67 , GLU A:152 , LYS A:159 , ARG B:127
BINDING SITE FOR RESIDUE SO4 A 1005
06
AC6
SOFTWARE
GLY A:123 , ALA A:124 , THR A:125 , HOH A:1107 , HOH A:1108 , HOH A:1119 , HOH A:1125
BINDING SITE FOR RESIDUE SO4 A 1006
07
AC7
SOFTWARE
ASP A:131 , CYS B:65 , HIS B:67 , GLU B:92
BINDING SITE FOR RESIDUE CD B 301
08
AC8
SOFTWARE
HOH A:1105 , CYS B:65 , GLU B:92 , ASP B:116 , CL B:303 , HOH B:401
BINDING SITE FOR RESIDUE CD B 302
09
AC9
SOFTWARE
CYS B:65 , ASP B:116 , ASN B:120 , CD B:302
BINDING SITE FOR RESIDUE CL B 303
10
BC1
SOFTWARE
LYS B:71 , ARG B:166 , GLU B:170 , HIS B:171 , LEU B:172 , HOH B:418 , HOH B:435
BINDING SITE FOR RESIDUE SO4 B 304
11
BC2
SOFTWARE
GLY B:123 , ALA B:124 , THR B:125 , HOH B:407 , HOH B:419 , HOH B:428
BINDING SITE FOR RESIDUE SO4 B 305
12
BC3
SOFTWARE
THR B:66 , HIS B:67 , GLU B:152 , LYS B:159
BINDING SITE FOR RESIDUE SO4 B 306
13
BC4
SOFTWARE
GLN A:95 , THR A:125 , ASP B:167 , GLN B:168 , ALA B:169 , GLU B:170 , HIS B:171 , THR B:174
BINDING SITE FOR CHAIN C OF PKIDN(DPR) PEPTIDE
14
BC5
SOFTWARE
ASP A:167 , GLN A:168 , ALA A:169 , GLU A:170 , HIS A:171 , THR A:174 , GLN B:95 , THR B:125 , HOH D:101
BINDING SITE FOR CHAIN D OF PKIDN(DPR) PEPTIDE
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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