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3WN5
Biol. Unit 2
Info
Asym.Unit (214 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (104 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ASYMMETRICALLY ENGINEERED FC VARIANT IN COMPLEX WITH FCGRIIIA
Authors
:
S. Kadono, F. Mimoto, H. Katada, T. Igawa, T. Kamikawa, K. Hattori
Date
:
05 Dec 13 (Deposition) - 19 Nov 14 (Release) - 19 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.78
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Receptor Complex, Fc Receptor, Antibody, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Mimoto, S. Kadono, H. Katada, T. Igawa, T. Kamikawa, K. Hattori
Crystal Structure Of A Novel Asymmetrically Engineered Fc Variant With Improved Affinity For Fc Gamma Rs.
Mol. Immunol. V. 58 132 2014
[
close entry info
]
Hetero Components
(6, 29)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
2a: BETA-L-FUCOSE (FULa)
2b: BETA-L-FUCOSE (FULb)
2c: BETA-L-FUCOSE (FULc)
2d: BETA-L-FUCOSE (FULd)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
3c: BETA-D-GALACTOSE (GALc)
4a: IODIDE ION (IODa)
4b: IODIDE ION (IODb)
4c: IODIDE ION (IODc)
4d: IODIDE ION (IODd)
4e: IODIDE ION (IODe)
4f: IODIDE ION (IODf)
4g: IODIDE ION (IODg)
4h: IODIDE ION (IODh)
4i: IODIDE ION (IODi)
4j: IODIDE ION (IODj)
4k: IODIDE ION (IODk)
4l: IODIDE ION (IODl)
4m: IODIDE ION (IODm)
4n: IODIDE ION (IODn)
4o: IODIDE ION (IODo)
4p: IODIDE ION (IODp)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
5d: ALPHA-D-MANNOSE (MANd)
5e: ALPHA-D-MANNOSE (MANe)
5f: ALPHA-D-MANNOSE (MANf)
5g: ALPHA-D-MANNOSE (MANg)
5h: ALPHA-D-MANNOSE (MANh)
5i: ALPHA-D-MANNOSE (MANi)
5j: ALPHA-D-MANNOSE (MANj)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
6l: N-ACETYL-D-GLUCOSAMINE (NAGl)
6m: N-ACETYL-D-GLUCOSAMINE (NAGm)
6n: N-ACETYL-D-GLUCOSAMINE (NAGn)
6o: N-ACETYL-D-GLUCOSAMINE (NAGo)
6p: N-ACETYL-D-GLUCOSAMINE (NAGp)
6q: N-ACETYL-D-GLUCOSAMINE (NAGq)
6r: N-ACETYL-D-GLUCOSAMINE (NAGr)
6s: N-ACETYL-D-GLUCOSAMINE (NAGs)
6t: N-ACETYL-D-GLUCOSAMINE (NAGt)
6u: N-ACETYL-D-GLUCOSAMINE (NAGu)
6v: N-ACETYL-D-GLUCOSAMINE (NAGv)
6w: N-ACETYL-D-GLUCOSAMINE (NAGw)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
FUL
2
Ligand/Ion
BETA-L-FUCOSE
3
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
4
IOD
9
Ligand/Ion
IODIDE ION
5
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
11
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(11, 11)
Info
All Sites
01: AC7 (SOFTWARE)
02: AC8 (SOFTWARE)
03: AC9 (SOFTWARE)
04: BC1 (SOFTWARE)
05: BC2 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC7
SOFTWARE
LYS D:414
BINDING SITE FOR RESIDUE IOD D 1009
02
AC8
SOFTWARE
CYS D:356 , THR E:350
BINDING SITE FOR RESIDUE IOD E 1010
03
AC9
SOFTWARE
SER E:254
BINDING SITE FOR RESIDUE IOD E 1011
04
BC1
SOFTWARE
VAL E:240 , LYS E:334
BINDING SITE FOR RESIDUE IOD E 1012
05
BC2
SOFTWARE
GLU F:43 , GLU F:65
BINDING SITE FOR RESIDUE IOD F 205
06
BC3
SOFTWARE
TYR F:30
BINDING SITE FOR RESIDUE IOD F 206
07
BC4
SOFTWARE
TRP F:87
BINDING SITE FOR RESIDUE IOD F 207
08
BC9
SOFTWARE
PHE D:241 , PHE D:243 , LYS D:246 , VAL D:264 , ASP D:265 , GLN D:295 , ASN D:297 , THR D:299 , ARG D:301 , GLU D:334 , HOH D:1102 , HOH D:1103
BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 297 RESIDUES 1001 TO 1008
09
CC1
SOFTWARE
MET E:239 , PHE E:241 , PHE E:243 , PRO E:244 , LYS E:246 , GLU E:258 , THR E:260 , VAL E:264 , ASP E:265 , ASN E:297 , THR E:299 , ARG E:301 , LYS E:334 , HOH E:1102
BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 297 RESIDUES 1001 TO 1009
10
CC2
SOFTWARE
HIS F:41 , ASN F:42 , ASP F:61 , SER F:63
BINDING SITE FOR CHAIN F OF SUGAR BOUND TO ASN F 42 RESIDUES 202 TO 203
11
CC3
SOFTWARE
ASN F:159 , VAL F:160 , SER F:161
BINDING SITE FOR MONO-SACCHARIDE NAG F 201 BOUND TO ASN F 159
[
close Site info
]
SAPs(SNPs)/Variants
(7, 9)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_008800 (L45H, chain F, )
2: VAR_008799 (L45R, chain F, )
3: VAR_058398 (G126D, chain F, )
4: VAR_058399 (Y137H, chain F, )
5: VAR_003960 (V155V, chain F, )
6: VAR_003887 (C356E, chain D/E, )
7: VAR_003888 (L358M, chain D/E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_008800
L
66
H
FCG3A_HUMAN
Disease (IMD20)
10127939
F
L
45
H
2
UniProt
VAR_008799
L
66
R
FCG3A_HUMAN
Polymorphism
10127939
F
L
45
R
3
UniProt
VAR_058398
G
147
D
FCG3A_HUMAN
Polymorphism
443082
F
G
126
D
4
UniProt
VAR_058399
Y
158
H
FCG3A_HUMAN
Polymorphism
396716
F
Y
137
H
5
UniProt
VAR_003960
F
176
V
FCG3A_HUMAN
Polymorphism
396991
F
V
155
V
6
UniProt
VAR_003887
D
239
E
IGHG1_HUMAN
Unclassified
---
D/E
C
356
E
7
UniProt
VAR_003888
L
241
M
IGHG1_HUMAN
Unclassified
---
D/E
L
358
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (D:423-429,E:423-429)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGHG1_HUMAN
81-87
306-312
2
-
-
-
D:423-429
E:423-429
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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]
Atom Selection
(currently selected atoms:
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)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain D
Chain E
Chain F
Asymmetric Unit 1
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Asym.Unit (214 KB)
Header - Asym.Unit
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