PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3WLK
Asym. Unit
Info
Asym.Unit (215 KB)
Biol.Unit 1 (208 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF BARLEY BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1 IN COMPLEX WITH 4-DEOXY-GLUCOSE
Authors
:
V. A. Streltsov, M. Hrmova
Date
:
12 Nov 13 (Deposition) - 25 Mar 15 (Release) - 25 Mar 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : X
Biol. Unit 1: X (1x)
Keywords
:
Beta Barrel, Hydrolase, Grain Development, Enzyme Function Initiative, Tim Barrel/Beta Sheet, N-Glycosylation, Plant Apoplast
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. A. Streltsov, S. Luang, J. R. Ketudat-Cairns, M. Raab, I. Tvaroska, S. Fort, J. Jimenez-Barbero, A. Peisley, J. N. Varghese, M. Hrmova
A Landscape Of The Product And Substrate Trajectories In A Glycoside Hydrolase
To Be Published
[
close entry info
]
Hetero Components
(8, 21)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
2c: BETA-D-MANNOSE (BMAc)
3a: BETA-L-FUCOSE (FULa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
5a: ALPHA-D-MANNOSE (MANa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7a: SULFATE ION (SO4a)
8a: BETA-D-XYLOPYRANOSE (XYPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
2
BMA
3
Ligand/Ion
BETA-D-MANNOSE
3
FUL
1
Ligand/Ion
BETA-L-FUCOSE
4
GOL
6
Ligand/Ion
GLYCEROL
5
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
7
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
SO4
1
Ligand/Ion
SULFATE ION
8
XYP
1
Ligand/Ion
BETA-D-XYLOPYRANOSE
[
close Hetero Component info
]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP X:95 , PHE X:144 , ARG X:158 , LYS X:206 , HIS X:207 , MET X:250 , TYR X:253 , ASP X:285 , MET X:316 , GLU X:491 , GOL X:715 , HOH X:801 , HOH X:802 , HOH X:803 , HOH X:804 , HOH X:805
BINDING SITE FOR RESIDUE BGC X 714
02
AC2
SOFTWARE
GLY X:56 , GLY X:57 , TRP X:286 , TRP X:430 , TRP X:434 , GLU X:491 , BGC X:714 , HOH X:803 , HOH X:805 , HOH X:869
BINDING SITE FOR RESIDUE GOL X 715
03
AC3
SOFTWARE
ARG X:386 , LYS X:387 , FUL X:711
BINDING SITE FOR RESIDUE GOL X 716
04
AC4
SOFTWARE
THR X:24 , ALA X:26 , ARG X:382 , GLN X:551 , HOH X:850 , HOH X:909 , HOH X:1097 , HOH X:1287
BINDING SITE FOR RESIDUE GOL X 717
05
AC5
SOFTWARE
ARG X:22 , THR X:24 , HOH X:899 , HOH X:979 , HOH X:1200
BINDING SITE FOR RESIDUE GOL X 718
06
AC6
SOFTWARE
ARG X:119 , ARG X:566 , LEU X:593 , GLY X:594 , HOH X:1250 , HOH X:1651
BINDING SITE FOR RESIDUE GOL X 719
07
AC7
SOFTWARE
ASN X:48 , GLN X:322 , ILE X:325 , SER X:326 , GLN X:375 , GLU X:376 , ASP X:379 , HOH X:1431 , HOH X:1481 , HOH X:1587
BINDING SITE FOR RESIDUE GOL X 720
08
AC8
SOFTWARE
PRO X:338 , MET X:339 , SER X:340 , HOH X:1403
BINDING SITE FOR RESIDUE SO4 X 721
09
AC9
SOFTWARE
GLU X:220 , ASN X:221 , THR X:294 , HOH X:883 , HOH X:1026 , HOH X:1137 , HOH X:1299 , HOH X:1321 , HOH X:1619 , HOH X:1655 , HOH X:1656 , HOH X:1667 , HOH X:1677
BINDING SITE FOR CHAIN X OF SUGAR BOUND TO ASN X 221 RESIDUES 701 TO 703
10
BC1
SOFTWARE
TYR X:425 , HIS X:487 , ASN X:496 , ASN X:498 , PRO X:502 , GLU X:503 , HOH X:1042 , HOH X:1047 , HOH X:1087 , HOH X:1280 , HOH X:1284 , HOH X:1426 , HOH X:1441 , HOH X:1474 , HOH X:1503 , HOH X:1535 , HOH X:1596 , HOH X:1628
BINDING SITE FOR CHAIN X OF SUGAR BOUND TO ASN X 498 RESIDUES 704 TO 708
11
BC2
SOFTWARE
THR X:118 , ARG X:119 , ARG X:566 , ASN X:600 , GOL X:716 , HOH X:860 , HOH X:954 , HOH X:1046 , HOH X:1063 , HOH X:1207 , HOH X:1374 , HOH X:1522 , HOH X:1594 , HOH X:1672
BINDING SITE FOR CHAIN X OF SUGAR BOUND TO ASN X 600 RESIDUES 709 TO 713
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain X
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (215 KB)
Header - Asym.Unit
Biol.Unit 1 (208 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3WLK
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
