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Asym. Unit
Info
Asym.Unit (287 KB)
Biol.Unit 1 (143 KB)
Biol.Unit 2 (140 KB)
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(1)
Title
:
COMPLEX STRUCTURE OF AN OPEN FORM OF NADPH-CYTOCHROME P450 REDUCTASE AND HEME OXYGENASE-1
Authors
:
M. Sugishima, H. Sato, Y. Higashimoto, J. Harada, K. Wada, K. Fukuyama,
Date
:
31 Oct 13 (Deposition) - 29 Jan 14 (Release) - 01 Jun 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Heme Degradation, Microsomal Membrane, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Sugishima, H. Sato, Y. Higashimoto, J. Harada, K. Wada, K. Fukuyama M. Noguchi
Structural Basis For The Electron Transfer From An Open For Of Nadph-Cytochrome P450 Oxidoreductase To Heme Oxygenase.
Proc. Natl. Acad. Sci. Usa V. 111 2524 2014
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: FLAVIN MONONUCLEOTIDE (FMNa)
2b: FLAVIN MONONUCLEOTIDE (FMNb)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
4a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
4b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
FMN
2
Ligand/Ion
FLAVIN MONONUCLEOTIDE
3
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
NAP
2
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:315 , ARG A:420 , ARG A:450 , TYR A:451 , TYR A:452 , SER A:453 , CYS A:468 , ALA A:469 , VAL A:470 , VAL A:472 , TYR A:474 , GLY A:484 , VAL A:485 , ALA A:486 , THR A:487 , TRP A:673
BINDING SITE FOR RESIDUE FAD A 701
2
AC2
SOFTWARE
SER A:86 , GLN A:87 , THR A:88 , GLY A:89 , THR A:90 , ALA A:91 , ALA A:138 , THR A:139 , TYR A:140 , GLY A:141 , LEU A:173 , GLY A:174 , ASN A:175 , TYR A:178 , HIS A:180 , PHE A:181 , ASN A:182 , ASP A:208 , LEU A:212
BINDING SITE FOR RESIDUE FMN A 702
3
AC3
SOFTWARE
ARG A:294 , PRO A:529 , GLY A:530 , THR A:531 , CYS A:562 , ARG A:563 , SER A:592 , ARG A:593 , LYS A:598 , TYR A:600 , GLN A:602 , ASN A:631 , MET A:632
BINDING SITE FOR RESIDUE NAP A 703
4
AC4
SOFTWARE
HIS B:315 , ARG B:420 , ARG B:450 , TYR B:451 , TYR B:452 , SER B:453 , CYS B:468 , ALA B:469 , VAL B:470 , VAL B:472 , TYR B:474 , LYS B:477 , GLY B:484 , VAL B:485 , ALA B:486 , THR B:487 , ALA B:534 , TRP B:673
BINDING SITE FOR RESIDUE FAD B 701
5
AC5
SOFTWARE
SER B:86 , GLN B:87 , THR B:88 , GLY B:89 , THR B:90 , ALA B:91 , ALA B:138 , THR B:139 , TYR B:140 , GLY B:141 , GLY B:143 , LEU B:173 , GLY B:174 , ASN B:175 , TYR B:178 , HIS B:180 , PHE B:181 , ASN B:182 , ASP B:208 , LEU B:212 , VAL D:146
BINDING SITE FOR RESIDUE FMN B 702
6
AC6
SOFTWARE
ARG B:294 , VAL B:470 , THR B:531 , CYS B:562 , SER B:592 , ARG B:593 , LYS B:598 , TYR B:600 , VAL B:601 , GLN B:602 , MET B:632
BINDING SITE FOR RESIDUE NAP B 703
7
AC7
SOFTWARE
HIS C:25 , GLN C:38 , TYR C:134 , THR C:135 , ARG C:136 , LEU C:138 , GLY C:139 , SER C:142 , LYS C:179 , ARG C:183
BINDING SITE FOR RESIDUE HEM C 300
8
AC8
SOFTWARE
LYS D:18 , HIS D:25 , GLU D:29 , MET D:34 , GLN D:38 , TYR D:134 , THR D:135 , ARG D:136 , GLY D:139 , SER D:142 , LYS D:179 , ARG D:183 , PHE D:207 , ASN D:210 , PHE D:214
BINDING SITE FOR RESIDUE HEM D 300
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: FLAVODOXIN_LIKE (A:80-224,B:80-224)
2: HEME_OXYGENASE (C:129-139,D:129-139)
3: FAD_FR (A:275-517,B:275-517)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FLAVODOXIN_LIKE
PS50902
Flavodoxin-like domain profile.
NCPR_RAT
80-224
2
A:80-224
B:80-224
2
HEME_OXYGENASE
PS00593
Heme oxygenase signature.
HMOX1_RAT
129-139
2
C:129-139
D:129-139
3
FAD_FR
PS51384
Ferredoxin reductase-type FAD binding domain profile.
NCPR_RAT
279-521
2
A:275-517
B:275-517
[
close PROSITE info
]
Exons
(17, 34)
Info
All Exons
Exon 1.3 (A:66-76 | B:70-76)
Exon 1.4 (A:77-119 | B:77-111)
Exon 1.5 (A:120-169 | B:123-169)
Exon 1.6 (A:170-211 | B:170-211)
Exon 1.7 (A:211-237 (gaps) | B:211-237 (gaps...)
Exon 1.8 (A:237-270 | B:237-270)
Exon 1.9 (A:270-309 | B:270-309)
Exon 1.10 (A:309-349 | B:309-349)
Exon 1.11 (A:349-409 | B:349-409)
Exon 1.12 (A:410-459 | B:410-459)
Exon 1.13 (A:460-550 (gaps) | B:460-550 (gaps...)
Exon 1.14 (A:550-598 | B:550-598)
Exon 1.15 (A:599-627 | B:599-627)
Exon 1.16 (A:627-674 | B:627-674)
Exon 2.2 (C:10-48 | D:10-48)
Exon 2.3b (C:49-212 | D:49-212)
Exon 2.4 (C:213-223 | D:213-223)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.2/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/1.13
12: Boundary 1.13/1.14
13: Boundary 1.14/1.15
14: Boundary 1.15/1.16
15: Boundary 1.16/-
16: Boundary 2.1/2.2
17: Boundary 2.2/2.3b
18: Boundary 2.3b/2.4
19: Boundary 2.4/2.5a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000001961
1
ENSRNOE00000313628
chr12:
22154339-22154313
27
NCPR_RAT
-
0
0
-
-
1.2
ENSRNOT00000001961
2
ENSRNOE00000013698
chr12:
22097301-22097110
192
NCPR_RAT
1-60
60
0
-
-
1.3
ENSRNOT00000001961
3
ENSRNOE00000013699
chr12:
22086163-22086115
49
NCPR_RAT
60-76
17
2
A:66-76
B:70-76
11
7
1.4
ENSRNOT00000001961
4
ENSRNOE00000013700
chr12:
22084470-22084342
129
NCPR_RAT
77-119
43
2
A:77-119
B:77-111
43
35
1.5
ENSRNOT00000001961
5
ENSRNOE00000013701
chr12:
22083630-22083481
150
NCPR_RAT
120-169
50
2
A:120-169
B:123-169
50
47
1.6
ENSRNOT00000001961
6
ENSRNOE00000013702
chr12:
22083067-22082943
125
NCPR_RAT
170-211
42
2
A:170-211
B:170-211
42
42
1.7
ENSRNOT00000001961
7
ENSRNOE00000013703
chr12:
22082851-22082762
90
NCPR_RAT
211-241
31
2
A:211-237 (gaps)
B:211-237 (gaps)
31
31
1.8
ENSRNOT00000001961
8
ENSRNOE00000013704
chr12:
22082368-22082270
99
NCPR_RAT
241-274
34
2
A:237-270
B:237-270
34
34
1.9
ENSRNOT00000001961
9
ENSRNOE00000013705
chr12:
22081493-22081377
117
NCPR_RAT
274-313
40
2
A:270-309
B:270-309
40
40
1.10
ENSRNOT00000001961
10
ENSRNOE00000013706
chr12:
22081288-22081170
119
NCPR_RAT
313-353
41
2
A:309-349
B:309-349
41
41
1.11
ENSRNOT00000001961
11
ENSRNOE00000013707
chr12:
22080459-22080278
182
NCPR_RAT
353-413
61
2
A:349-409
B:349-409
61
61
1.12
ENSRNOT00000001961
12
ENSRNOE00000013708
chr12:
22080183-22080034
150
NCPR_RAT
414-463
50
2
A:410-459
B:410-459
50
50
1.13
ENSRNOT00000001961
13
ENSRNOE00000013709
chr12:
22079929-22079659
271
NCPR_RAT
464-554
91
2
A:460-550 (gaps)
B:460-550 (gaps)
91
91
1.14
ENSRNOT00000001961
14
ENSRNOE00000013710
chr12:
22079578-22079433
146
NCPR_RAT
554-602
49
2
A:550-598
B:550-598
49
49
1.15
ENSRNOT00000001961
15
ENSRNOE00000013711
chr12:
22079343-22079258
86
NCPR_RAT
603-631
29
2
A:599-627
B:599-627
29
29
1.16
ENSRNOT00000001961
16
ENSRNOE00000211856
chr12:
22079134-22078629
506
NCPR_RAT
631-678
48
2
A:627-674
B:627-674
48
48
2.1
ENSRNOT00000019192
1
ENSRNOE00000437660
chr19:
13963139-13963277
139
HMOX1_RAT
1-8
8
0
-
-
2.2
ENSRNOT00000019192
2
ENSRNOE00000433615
chr19:
13965179-13965299
121
HMOX1_RAT
8-48
41
2
C:10-48
D:10-48
39
39
2.3b
ENSRNOT00000019192
3b
ENSRNOE00000135098
chr19:
13966126-13966617
492
HMOX1_RAT
49-212
164
2
C:49-212
D:49-212
164
164
2.4
ENSRNOT00000019192
4
ENSRNOE00000135373
chr19:
13968127-13968226
100
HMOX1_RAT
213-246
34
2
C:213-223
D:213-223
11
11
2.5a
ENSRNOT00000019192
5a
ENSRNOE00000265745
chr19:
13969266-13969955
690
HMOX1_RAT
246-289
44
0
-
-
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Pfam Domains
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all PFAM domains
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