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3WKQ
Asym. Unit
Info
Asym.Unit (132 KB)
Biol.Unit 1 (371 KB)
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(1)
Title
:
COPPER-CONTAINING NITRITE REDUCTASE FROM GEOBACILLUS THERMODENITRIFICANS IN COMPLEX WITH FORMATE
Authors
:
Y. Fukuda, T. Inoue
Date
:
29 Oct 13 (Deposition) - 11 Dec 13 (Release) - 11 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.15
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Greek Key Beta Barrel, Nitrite Reductase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Fukuda, T. Inoue
Copper-Containing Nitrite Reductase From Geobacillus Thermodenitrificans In Complex With Formate
To Be Published
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close entry info
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Hetero Components
(6, 21)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
1f: COPPER (II) ION (CUf)
2a: 1,2-ETHANEDIOL (EDOa)
3a: FORMIC ACID (FMTa)
3b: FORMIC ACID (FMTb)
3c: FORMIC ACID (FMTc)
3d: FORMIC ACID (FMTd)
3e: FORMIC ACID (FMTe)
3f: FORMIC ACID (FMTf)
3g: FORMIC ACID (FMTg)
3h: FORMIC ACID (FMTh)
3i: FORMIC ACID (FMTi)
4a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
4b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
4c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
5a: SODIUM ION (NAa)
6a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
6
Ligand/Ion
COPPER (II) ION
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
FMT
9
Ligand/Ion
FORMIC ACID
4
MPD
3
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
5
NA
1
Ligand/Ion
SODIUM ION
6
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:95 , CYS A:135 , HIS A:143 , MET A:148
BINDING SITE FOR RESIDUE CU A 401
02
AC2
SOFTWARE
HIS A:100 , HIS A:134 , HIS A:294 , FMT A:408 , HOH A:872
BINDING SITE FOR RESIDUE CU A 402
03
AC3
SOFTWARE
HIS A:42 , GLU A:53 , HIS A:83 , FMT A:410 , HOH A:736 , HOH A:844
BINDING SITE FOR RESIDUE CU A 403
04
AC4
SOFTWARE
HIS A:39 , FMT A:414
BINDING SITE FOR RESIDUE CU A 404
05
AC5
SOFTWARE
PRO A:191 , GLU A:239 , HIS A:298 , FMT A:413 , HOH A:716 , HOH A:784 , HOH A:847
BINDING SITE FOR RESIDUE CU A 405
06
AC6
SOFTWARE
ASP A:167 , FMT A:411 , HOH A:718 , HOH A:797 , HOH A:823
BINDING SITE FOR RESIDUE CU A 406
07
AC7
SOFTWARE
GLU A:78 , HOH A:683
BINDING SITE FOR RESIDUE NA A 407
08
AC8
SOFTWARE
HIS A:134 , HIS A:244 , VAL A:246 , HIS A:294 , PHE A:296 , CU A:402 , FMT A:409 , HOH A:525 , HOH A:872 , HOH A:873
BINDING SITE FOR RESIDUE FMT A 408
09
AC9
SOFTWARE
LYS A:138 , FMT A:408 , HOH A:595 , HOH A:724 , HOH A:873
BINDING SITE FOR RESIDUE FMT A 409
10
BC1
SOFTWARE
HIS A:42 , GLU A:53 , GLY A:57 , HIS A:83 , CU A:403 , HOH A:546 , HOH A:700 , HOH A:736 , HOH A:803 , HOH A:844
BINDING SITE FOR RESIDUE FMT A 410
11
BC2
SOFTWARE
ASP A:167 , CU A:406 , HOH A:730 , HOH A:797 , HOH A:823
BINDING SITE FOR RESIDUE FMT A 411
12
BC3
SOFTWARE
ASN A:16 , VAL A:17 , ILE A:18 , HIS A:21 , TRP A:63 , TYR A:180
BINDING SITE FOR RESIDUE FMT A 412
13
BC4
SOFTWARE
GLN A:187 , VAL A:190 , PRO A:191 , ASN A:297 , HIS A:298 , LYS A:301 , CU A:405 , HOH A:665 , HOH A:716 , HOH A:784 , HOH A:847
BINDING SITE FOR RESIDUE FMT A 413
14
BC5
SOFTWARE
PRO A:38 , HIS A:39 , LYS A:218 , CU A:404 , HOH A:802 , HOH A:853
BINDING SITE FOR RESIDUE FMT A 414
15
BC6
SOFTWARE
LYS A:32 , MET A:33 , GLU A:34 , HIS A:42 , GLU A:44 , HOH A:866 , HOH A:867
BINDING SITE FOR RESIDUE FMT A 415
16
BC7
SOFTWARE
ASN A:258 , ASN A:260 , GLN A:264 , HOH A:547 , HOH A:683 , HOH A:835
BINDING SITE FOR RESIDUE FMT A 416
17
BC8
SOFTWARE
ASP A:163 , VAL A:166 , ASP A:167 , ARG A:168 , GLU A:169 , ARG A:229 , HOH A:672 , HOH A:743
BINDING SITE FOR RESIDUE MPD A 417
18
BC9
SOFTWARE
ASP A:55 , SER A:192 , TYR A:193 , THR A:212 , GLN A:300 , LYS A:301 , GLY A:302 , HOH A:655
BINDING SITE FOR RESIDUE MPD A 418
19
CC1
SOFTWARE
ALA A:200 , LYS A:202 , HOH A:701
BINDING SITE FOR RESIDUE MPD A 419
20
CC2
SOFTWARE
ARG A:285 , HOH A:585 , HOH A:592 , HOH A:664 , HOH A:837
BINDING SITE FOR RESIDUE EDO A 420
21
CC3
SOFTWARE
HIS A:262 , LEU A:263 , HOH A:854 , HOH A:855
BINDING SITE FOR RESIDUE SO4 A 421
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (132 KB)
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