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3WI3
Asym. Unit
Info
Asym.Unit (234 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (77 KB)
Biol.Unit 3 (76 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SLD3/TRESLIN DOMAIN FROM YEAST SLD3
Authors
:
H. Itou, H. Araki, Y. Shirakihara
Date
:
05 Sep 13 (Deposition) - 20 Aug 14 (Release) - 17 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Replication Regulator, Cdc45-Binding, Alpha Helical
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Itou, S. Muramatsu, Y. Shirakihara, H. Araki
Crystal Structure Of The Homology Domain Of The Eukaryotic Dna Replication Proteins Sld3/Treslin.
Structure V. 22 1341 2014
[
close entry info
]
Hetero Components
(2, 27)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
24
Ligand/Ion
1,2-ETHANEDIOL
2
SO4
3
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:160 , LYS A:164 , TYR A:178 , SER A:182 , ASN A:183 , ARG A:186 , ASN C:290
BINDING SITE FOR RESIDUE SO4 A 501
02
AC2
SOFTWARE
ASN A:255 , SER A:256 , SER A:257 , THR A:258 , ILE A:259 , EDO A:515 , PRO B:175 , GLU B:387 , TYR B:396
BINDING SITE FOR RESIDUE EDO A 502
03
AC3
SOFTWARE
SER A:268 , ILE A:271 , LYS A:272 , ALA A:350 , ASP A:354 , LEU A:390 , HOH A:617
BINDING SITE FOR RESIDUE EDO A 503
04
AC4
SOFTWARE
ARG A:221 , HIS A:222 , ARG A:225 , LEU A:226 , LEU A:227 , CYS A:263 , LYS A:267 , EDO A:514
BINDING SITE FOR RESIDUE EDO A 504
05
AC5
SOFTWARE
ARG A:225 , ALA A:260 , CYS A:263 , VAL A:264 , EDO A:514
BINDING SITE FOR RESIDUE EDO A 505
06
AC6
SOFTWARE
LYS A:158 , ILE A:161 , GLU A:162 , MET A:207 , LYS A:210 , PHE A:211
BINDING SITE FOR RESIDUE EDO A 506
07
AC7
SOFTWARE
VAL A:265 , SER A:268 , ARG A:269 , LYS A:272 , ALA A:388 , HOH A:633
BINDING SITE FOR RESIDUE EDO A 507
08
AC8
SOFTWARE
LYS A:267 , ARG A:349 , LEU A:353 , EDO A:517 , HOH A:603 , HOH A:656
BINDING SITE FOR RESIDUE EDO A 508
09
AC9
SOFTWARE
GLU A:162 , TYR A:166 , EDO A:510
BINDING SITE FOR RESIDUE EDO A 509
10
BC1
SOFTWARE
TYR A:166 , LEU A:213 , ARG A:221 , EDO A:509 , HOH A:608 , HOH A:632 , HOH A:640
BINDING SITE FOR RESIDUE EDO A 510
11
BC2
SOFTWARE
CYS A:351 , ASP A:354 , ILE A:355 , LEU A:417 , EDO A:516 , HOH A:612 , LEU B:228 , ILE B:259
BINDING SITE FOR RESIDUE EDO A 511
12
BC3
SOFTWARE
ASN A:224 , LEU A:226 , GLU A:229 , EDO B:504
BINDING SITE FOR RESIDUE EDO A 512
13
BC4
SOFTWARE
TYR A:154 , SER A:155 , PRO A:157 , ARG A:186 , THR A:190
BINDING SITE FOR RESIDUE EDO A 513
14
BC5
SOFTWARE
HIS A:222 , CYS A:263 , VAL A:264 , EDO A:504 , EDO A:505
BINDING SITE FOR RESIDUE EDO A 514
15
BC6
SOFTWARE
ARG A:225 , SER A:256 , ILE A:259 , ALA A:260 , EDO A:502 , ALA B:177 , TYR B:396 , TYR B:401 , HOH B:604
BINDING SITE FOR RESIDUE EDO A 515
16
BC7
SOFTWARE
LEU A:417 , LYS A:418 , EDO A:511 , HOH A:612 , ASN B:224 , ARG B:225 , HOH B:608
BINDING SITE FOR RESIDUE EDO A 516
17
BC8
SOFTWARE
LYS A:267 , ILE A:352 , LEU A:353 , LEU A:356 , EDO A:508
BINDING SITE FOR RESIDUE EDO A 517
18
BC9
SOFTWARE
ARG A:240 , LYS A:241 , TYR B:160 , TYR B:178 , SER B:182 , ASN B:183 , ARG B:186 , HOH B:644 , HOH B:686
BINDING SITE FOR RESIDUE SO4 B 501
19
CC1
SOFTWARE
ASP B:167 , ALA B:168 , SER B:171 , THR B:174 , TYR B:178 , EDO B:503 , HOH B:606 , HOH B:607
BINDING SITE FOR RESIDUE EDO B 502
20
CC2
SOFTWARE
LYS B:164 , ASP B:167 , TYR B:178 , ASN B:183 , EDO B:502
BINDING SITE FOR RESIDUE EDO B 503
21
CC3
SOFTWARE
ASN A:224 , EDO A:512 , LYS B:181 , TYR B:401 , HOH B:650
BINDING SITE FOR RESIDUE EDO B 504
22
CC4
SOFTWARE
VAL B:265 , SER B:268 , ARG B:269 , HIS B:377 , ILE B:381 , EDO B:507
BINDING SITE FOR RESIDUE EDO B 505
23
CC5
SOFTWARE
ARG B:221 , HIS B:222 , ARG B:225 , LEU B:226 , LEU B:227 , CYS B:263 , HOH B:646
BINDING SITE FOR RESIDUE EDO B 506
24
CC6
SOFTWARE
ILE B:172 , HIS B:173 , HIS B:377 , ASN B:380 , ALA B:388 , EDO B:505 , EDO B:509
BINDING SITE FOR RESIDUE EDO B 507
25
CC7
SOFTWARE
LYS B:267 , ARG B:349 , HOH B:627
BINDING SITE FOR RESIDUE EDO B 508
26
CC8
SOFTWARE
LYS A:254 , ASN A:255 , SER A:256 , HOH A:606 , HIS B:173 , EDO B:507 , HOH B:605
BINDING SITE FOR RESIDUE EDO B 509
27
CC9
SOFTWARE
TYR C:160 , TYR C:178 , SER C:182 , ASN C:183 , ARG C:186
BINDING SITE FOR RESIDUE SO4 C 501
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
[
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]
Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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Info
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
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Info
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Sorry, no Info available
[
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Atom Selection
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Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (234 KB)
Header - Asym.Unit
Biol.Unit 1 (79 KB)
Header - Biol.Unit 1
Biol.Unit 2 (77 KB)
Header - Biol.Unit 2
Biol.Unit 3 (76 KB)
Header - Biol.Unit 3
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