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Getting 'Exon' information from database.
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Asym. Unit
Info
Asym.Unit (170 KB)
Biol.Unit 1 (242 KB)
Biol.Unit 2 (246 KB)
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(1)
Title
:
STRUCTURE OF PCNA BOUND TO A SMALL MOLECULE INHIBITOR
Authors
:
H. Hashimoto
Date
:
12 Aug 13 (Deposition) - 05 Feb 14 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Keywords
:
Dna Binding, Dna Binding Protein-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Inoue, S. Kikuchi, A. Hishiki, Y. Shao, R. Heath, B. J. Evison, M. Actis, C. E. Canman, H. Hashimoto, N. Fujii
A Small Molecule Inhibitor Of Monoubiquitinated Proliferating Cell Nuclear Antigen (Pcna) Inhibits Repair O Interstrand Dna Crosslink, Enhances Dna Double-Strand Break And Sensitizes Cancer Cells To Cisplatin
J. Biol. Chem. 2014
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
2a: 4-{4-[(2S)-2-AMINO-3-HYDROXYPROPYL... (T2Ba)
2b: 4-{4-[(2S)-2-AMINO-3-HYDROXYPROPYL... (T2Bb)
2c: 4-{4-[(2S)-2-AMINO-3-HYDROXYPROPYL... (T2Bc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
2
Ligand/Ion
SULFATE ION
2
T2B
3
Ligand/Ion
4-{4-[(2S)-2-AMINO-3-HYDROXYPROPYL]-2,6-DIIODOPHENOXY}PHENOL
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:40 , HIS A:44 , LEU A:47 , GLU A:124 , GLY A:127 , PRO A:234 , TYR A:250 , HOH A:452 , GLN B:131 , VAL B:233
BINDING SITE FOR RESIDUE T2B A 301
2
AC2
SOFTWARE
ARG A:53 , LYS A:240 , GLY A:245 , HIS A:246
BINDING SITE FOR RESIDUE SO4 A 302
3
AC3
SOFTWARE
GLN A:108 , GLU A:109 , LYS A:181 , LEU A:182 , SER A:183 , HOH A:462 , ARG B:64 , ASN B:95
BINDING SITE FOR RESIDUE T2B A 303
4
AC4
SOFTWARE
ARG B:53 , LYS B:240 , GLY B:245 , HIS B:246
BINDING SITE FOR RESIDUE SO4 B 301
5
AC5
SOFTWARE
ASP A:232 , MET B:40 , VAL B:45 , LEU B:47 , GLY B:127 , PRO B:129 , GLN B:131 , PRO B:234 , TYR B:250
BINDING SITE FOR RESIDUE T2B B 302
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071871 (S228I, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071871
S
228
I
PCNA_HUMAN
Disease (ATLD2)
---
A/B
S
228
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PCNA_1 (A:34-57,B:34-57)
2: PCNA_2 (A:61-79,B:61-79)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PCNA_1
PS01251
Proliferating cell nuclear antigen signature 1.
PCNA_HUMAN
34-57
2
A:34-57
B:34-57
2
PCNA_2
PS00293
Proliferating cell nuclear antigen signature 2.
PCNA_HUMAN
61-79
2
A:61-79
B:61-79
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Exons
(6, 12)
Info
All Exons
Exon 1.2b (A:1-74 | B:1-74)
Exon 1.3 (A:74-107 | B:74-107)
Exon 1.4 (A:107-129 | B:107-129)
Exon 1.5 (A:130-194 (gaps) | B:130-194 (gaps...)
Exon 1.6 (A:195-236 | B:195-236)
Exon 1.7 (A:236-255 | B:236-255)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2b
2: Boundary 1.2b/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000379160
1
ENSE00001480155
chr20:
5107272-5107146
127
PCNA_HUMAN
-
0
0
-
-
1.2b
ENST00000379160
2b
ENSE00001480145
chr20:
5100560-5100224
337
PCNA_HUMAN
1-74
74
2
A:1-74
B:1-74
74
74
1.3
ENST00000379160
3
ENSE00001747465
chr20:
5099512-5099415
98
PCNA_HUMAN
74-107
34
2
A:74-107
B:74-107
34
34
1.4
ENST00000379160
4
ENSE00001693283
chr20:
5099323-5099256
68
PCNA_HUMAN
107-129
23
2
A:107-129
B:107-129
23
23
1.5
ENST00000379160
5
ENSE00000906721
chr20:
5098310-5098116
195
PCNA_HUMAN
130-194
65
2
A:130-194 (gaps)
B:130-194 (gaps)
65
65
1.6
ENST00000379160
6
ENSE00000906720
chr20:
5096218-5096095
124
PCNA_HUMAN
195-236
42
2
A:195-236
B:195-236
42
42
1.7
ENST00000379160
7
ENSE00000906719
chr20:
5096008-5095599
410
PCNA_HUMAN
236-261
26
2
A:236-255
B:236-255
20
20
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3wgwa1 (A:1-126)
1b: SCOP_d3wgwa2 (A:127-255)
1c: SCOP_d3wgwb1 (B:1-126)
1d: SCOP_d3wgwb2 (B:127-255)
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Protein Domains
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
DNA polymerase processivity factor
(40)
Protein domain
:
Proliferating cell nuclear antigen (PCNA)
(24)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d3wgwa1
A:1-126
1b
d3wgwa2
A:127-255
1c
d3wgwb1
B:1-126
1d
d3wgwb2
B:127-255
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Asym.Unit (170 KB)
Header - Asym.Unit
Biol.Unit 1 (242 KB)
Header - Biol.Unit 1
Biol.Unit 2 (246 KB)
Header - Biol.Unit 2
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