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3WFD
Asym. Unit
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Asym.Unit (361 KB)
Biol.Unit 1 (353 KB)
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(1)
Title
:
REDUCED AND ACETALDOXIME-BOUND CYTOCHROME C-DEPENDENT NITRIC OXIDE REDUCTASE (CNOR) FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH ANTIBODY FRAGMENT
Authors
:
N. Sato, S. Ishii, T. Hino, H. Sugimoto, Y. Fukumori, Y. Shiro, T. Tosha
Date
:
18 Jul 13 (Deposition) - 28 May 14 (Release) - 28 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : B,C,H,L
Biol. Unit 1: B,C,H,L (1x)
Keywords
:
Metal-Binding, Membrane Protein, Immune System-Oxidoreductase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Sato, S. Ishii, H. Sugimoto, T. Hino, Y. Fukumori, Y. Sako, Y. Shiro, T. Tosha
Structures Of Reduced And Ligand-Bound Nitric Oxide Reductase Provide Insights Into Functional Differences In Respiratory Enzymes
Proteins 2013
(for further references see the
PDB file header
)
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Hetero Components
(6, 8)
Info
All Hetero Components
1a: DECYL 4-O-ALPHA-D-GLUCOPYRANOSYL-1... (10Ma)
1b: DECYL 4-O-ALPHA-D-GLUCOPYRANOSYL-1... (10Mb)
2a: (1E)-N-HYDROXYETHANIMINE (AXOa)
3a: CALCIUM ION (CAa)
4a: FE (III) ION (FEa)
5a: HEME C (HECa)
6a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
6b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
View:
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No.
Name
Count
Type
Full Name
1
10M
2
Ligand/Ion
DECYL 4-O-ALPHA-D-GLUCOPYRANOSYL-1-THIO-BETA-D-GLUCOPYRANOSIDE
2
AXO
1
Ligand/Ion
(1E)-N-HYDROXYETHANIMINE
3
CA
1
Ligand/Ion
CALCIUM ION
4
FE
1
Ligand/Ion
FE (III) ION
5
HEC
1
Ligand/Ion
HEME C
6
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN B:30 , ILE B:31 , GLY B:34 , MET B:37 , TYR B:41 , PHE B:53 , ARG B:57 , HIS B:60 , GLU B:135 , PHE B:136 , HIS B:349 , PHE B:352 , TYR B:353 , MET B:397 , ARG B:440 , GLY B:444 , HEM B:802 , CA B:806 , HOH B:918 , ALA C:72 , TYR C:73
BINDING SITE FOR RESIDUE HEM B 801
2
AC2
SOFTWARE
GLU B:135 , PHE B:136 , TRP B:203 , VAL B:210 , GLU B:211 , HIS B:258 , SER B:277 , GLU B:280 , ALA B:322 , GLY B:326 , PHE B:327 , HIS B:329 , THR B:330 , ASN B:335 , HIS B:339 , GLY B:340 , THR B:344 , HIS B:347 , ALA B:351 , PHE B:352 , ALA B:355 , TYR B:356 , HEM B:801 , AXO B:804 , CA B:806 , HOH B:906 , HOH B:927
BINDING SITE FOR RESIDUE HEM B 802
3
AC3
SOFTWARE
HIS B:207 , GLU B:211 , HIS B:258 , HIS B:259 , AXO B:804
BINDING SITE FOR RESIDUE FE B 803
4
AC4
SOFTWARE
VAL B:206 , GLU B:211 , HIS B:258 , HIS B:259 , HEM B:802 , FE B:803
BINDING SITE FOR RESIDUE AXO B 804
5
AC5
SOFTWARE
MET B:328 , TYR B:337 , MET B:417 , 10M B:807
BINDING SITE FOR RESIDUE 10M B 805
6
AC6
SOFTWARE
ARG B:57 , GLU B:135 , HEM B:801 , HEM B:802 , HOH B:906 , GLY C:71 , TYR C:73
BINDING SITE FOR RESIDUE CA B 806
7
AC7
SOFTWARE
LEU B:270 , TRP B:271 , TYR B:336 , TYR B:337 , 10M B:805 , ASN C:138 , GLN C:139 , PRO C:142
BINDING SITE FOR RESIDUE 10M B 807
8
AC8
SOFTWARE
CYS C:61 , CYS C:64 , HIS C:65 , ALA C:75 , PRO C:76 , LEU C:78 , ARG C:84 , ARG C:85 , TRP C:98 , LEU C:104 , ARG C:109 , ARG C:110 , ALA C:111 , MET C:112 , PRO C:113 , PHE C:115 , LEU C:125 , HOH C:306 , HOH C:313 , HOH C:315 , HOH C:342
BINDING SITE FOR RESIDUE HEC C 201
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: COX1 (B:19-458)
2: CYTC (C:47-133)
3: COX1_CUB (B:203-259)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COX1
PS50855
Cytochrome oxidase subunit I profile.
NORB_PSEAE
19-466
1
B:19-458
2
CYTC
PS51007
Cytochrome c family profile.
NORC_PSEAE
47-133
1
C:47-133
3
COX1_CUB
PS00077
Heme-copper oxidase catalytic subunit, copper B binding region signature.
NORB_PSEAE
203-259
1
B:203-259
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (361 KB)
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