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3WD5
Asym. Unit
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Asym.Unit (97 KB)
Biol.Unit 1 (92 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TNFALPHA IN COMPLEX WITH ADALIMUMAB FAB FRAGMENT
Authors
:
S. Hu, S. Y. Liang, Y. J. Guo, Z. Y. Lou
Date
:
06 Jun 13 (Deposition) - 14 Aug 13 (Release) - 01 Jul 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,H,L
Biol. Unit 1: A,H,L (1x)
Keywords
:
Antibody Binding Epitope, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Hu, S. Y. Liang, H. Guo, D. Zhang, H. Li, X. Wang, W. Yang, W. Qian, S. Hou, H. Wang, Y. J. Guo, Z. Y. Lou
Comparison Of The Inhibition Mechanisms Of Adalimumab And Infliximab In Treating Tumor Necrosis Factor Alpha-Associated Diseases From A Molecular View
J. Biol. Chem. V. 288 27059 2013
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_019378 (P8L, chain A, )
2: VAR_011927 (A18T, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019378
P
84
L
TNFA_HUMAN
Polymorphism
4645843
A
P
8
L
2
UniProt
VAR_011927
A
94
T
TNFA_HUMAN
Polymorphism
1800620
A
A
18
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: TNF_2 (A:13-157)
2: TNF_1 (A:48-64)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TNF_2
PS50049
TNF family profile.
TNFA_HUMAN
89-233
1
A:13-157
2
TNF_1
PS00251
TNF family signature.
TNFA_HUMAN
124-140
1
A:48-64
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Exons
(2, 2)
Info
All Exons
Exon 1.13 (A:6-18)
Exon 1.14b (A:18-157)
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All Exon Boundaries
1: Boundary 1.12/1.13
2: Boundary 1.13/1.14b
3: Boundary 1.14b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.9f
ENST00000383496
9f
ENSE00001901059
HSCHR6_MHC_QBL:31533585-31533945
361
TNFA_HUMAN
1-62
62
0
-
-
1.12
ENST00000383496
12
ENSE00001626927
HSCHR6_MHC_QBL:31534554-31534599
46
TNFA_HUMAN
63-78
16
0
-
-
1.13
ENST00000383496
13
ENSE00001681816
HSCHR6_MHC_QBL:31534787-31534834
48
TNFA_HUMAN
78-94
17
1
A:6-18
13
1.14b
ENST00000383496
14b
ENSE00001902809
HSCHR6_MHC_QBL:31535136-31536356
1221
TNFA_HUMAN
94-233
140
1
A:18-157
140
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SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d3wd5l1 (L:1-106)
2a: SCOP_d3wd5l2 (L:107-213)
3a: SCOP_d3wd5a_ (A:)
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)
Protein Domains
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(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d3wd5l1
L:1-106
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
2a
d3wd5l2
L:107-213
Fold
:
TNF-like
(100)
Superfamily
:
TNF-like
(100)
Family
:
TNF-like
(82)
Protein domain
:
Tumor necrosis factor (TNF)
(14)
Human (Homo sapiens) [TaxId: 9606]
(13)
3a
d3wd5a_
A:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (97 KB)
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Header - Biol.Unit 1
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