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3WCR
Biol. Unit 1
Info
Asym.Unit (80 KB)
Biol.Unit 1 (147 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PLANT LECTIN (LIGAND-FREE FORM)
Authors
:
M. Nagae, Y. Yamaguchi
Date
:
31 May 13 (Deposition) - 09 Apr 14 (Release) - 09 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Legume Lectin Fold, Carbohydrate Binding, N-Glycan, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Nagae, K. Soga, K. Morita-Matsumoto, S. Hanashima, A. Ikeda, K. Yamamoto, Y. Yamaguchi
Phytohemagglutinin From Phaseolus Vulgaris (Pha-E) Displays A Novel Glycan Recognition Mode Using A Common Legume Lecti Fold
Glycobiology V. 24 368 2014
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
1h: BROMIDE ION (BRh)
1i: BROMIDE ION (BRi)
1j: BROMIDE ION (BRj)
1k: BROMIDE ION (BRk)
1l: BROMIDE ION (BRl)
1m: BROMIDE ION (BRm)
1n: BROMIDE ION (BRn)
1o: BROMIDE ION (BRo)
1p: BROMIDE ION (BRp)
1q: BROMIDE ION (BRq)
1r: BROMIDE ION (BRr)
1s: BROMIDE ION (BRs)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
-1
Ligand/Ion
BROMIDE ION
2
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:92 , SER A:248
BINDING SITE FOR RESIDUE BR A 1002
02
AC2
SOFTWARE
LYS A:180
BINDING SITE FOR RESIDUE BR A 1003
03
AC3
SOFTWARE
PRO A:62 , ASN B:59
BINDING SITE FOR RESIDUE BR A 1004
04
AC4
SOFTWARE
THR A:173 , THR A:174 , THR A:175
BINDING SITE FOR RESIDUE BR A 1005
05
AC5
SOFTWARE
GLY A:125
BINDING SITE FOR RESIDUE BR A 1006
06
AC6
SOFTWARE
ILE A:236 , THR A:237
BINDING SITE FOR RESIDUE BR A 1007
07
AC7
SOFTWARE
TRP A:225 , NAG B:1001
BINDING SITE FOR RESIDUE BR A 1008
08
AC8
SOFTWARE
ASN A:33 , GLU A:34 , NAG A:1001
BINDING SITE FOR RESIDUE BR A 1009
09
AC9
SOFTWARE
THR A:25 , GLN A:77 , HOH B:1104
BINDING SITE FOR RESIDUE BR A 1010
10
BC1
SOFTWARE
TYR A:133 , ARG B:41
BINDING SITE FOR RESIDUE BR B 1002
11
BC2
SOFTWARE
ASN A:132 , GLN B:40 , PRO B:120
BINDING SITE FOR RESIDUE BR B 1003
12
BC3
SOFTWARE
GLN B:119 , LYS B:121
BINDING SITE FOR RESIDUE BR B 1004
13
BC4
SOFTWARE
NAG A:1001 , GLU B:224 , TRP B:225
BINDING SITE FOR RESIDUE BR B 1005
14
BC5
SOFTWARE
ILE B:236 , THR B:237
BINDING SITE FOR RESIDUE BR B 1006
15
BC6
SOFTWARE
GLU B:34 , NAG B:1001
BINDING SITE FOR RESIDUE BR B 1007
16
BC7
SOFTWARE
SER B:92 , SER B:248 , TRP B:249 , SER B:250
BINDING SITE FOR RESIDUE BR B 1009
17
BC8
SOFTWARE
TYR B:133
BINDING SITE FOR RESIDUE BR B 1010
18
BC9
SOFTWARE
THR B:173 , THR B:175
BINDING SITE FOR RESIDUE BR B 1011
19
CC1
SOFTWARE
ARG A:31 , ASN A:33 , SER A:46 , BR A:1009 , GLU B:224 , TRP B:225 , BR B:1005
BINDING SITE FOR MONO-SACCHARIDE NAG A1001 BOUND TO ASN A 33
20
CC2
SOFTWARE
TRP A:225 , BR A:1008 , ARG B:31 , ASN B:33 , SER B:46 , BR B:1007
BINDING SITE FOR MONO-SACCHARIDE NAG B1001 BOUND TO ASN B 33
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: LECTIN_LEGUME_BETA (A:142-148,B:142-148)
2: LECTIN_LEGUME_ALPHA (A:222-231,B:222-231)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LECTIN_LEGUME_BETA
PS00307
Legume lectins beta-chain signature.
PHAE_PHAVU
142-148
4
A:142-148
B:142-148
2
LECTIN_LEGUME_ALPHA
PS00308
Legume lectins alpha-chain signature.
PHAE_PHAVU
222-231
4
A:222-231
B:222-231
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3wcra_ (A:)
1b: SCOP_d3wcrb_ (B:)
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Classes
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
automated matches
(63)
French bean (Phaseolus vulgaris) [TaxId: 3885]
(3)
1a
d3wcra_
A:
1b
d3wcrb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Asymmetric Unit 1
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