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3WB8
Asym. Unit
Info
Asym.Unit (991 KB)
Biol.Unit 1 (129 KB)
Biol.Unit 2 (123 KB)
Biol.Unit 3 (128 KB)
Biol.Unit 4 (128 KB)
Biol.Unit 5 (128 KB)
Biol.Unit 6 (128 KB)
Biol.Unit 7 (129 KB)
Biol.Unit 8 (125 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MYOVA-GTD
Authors
:
Z. Wei, X. Liu, C. Yu, M. Zhang
Date
:
13 May 13 (Deposition) - 10 Jul 13 (Release) - 14 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Keywords
:
Helix Bundle, Motor Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Wei, X. Liu, C. Yu, M. Zhang
Structural Basis Of Cargo Recognitions For Class V Myosins
Proc. Natl. Acad. Sci. Usa V. 110 11314 2013
[
close entry info
]
Hetero Components
(1, 22)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
22
Ligand/Ion
1,2-ETHANEDIOL
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:1692 , GLY A:1695 , ALA A:1696 , THR A:1741 , LEU A:1742 , PRO A:1744 , LEU A:1745 , MET A:1817
BINDING SITE FOR RESIDUE EDO A 1901
02
AC2
SOFTWARE
PRO A:1504 , SER A:1557 , ARG A:1561 , HIS A:1676 , GLY A:1677 , HOH A:2016 , HOH A:2039
BINDING SITE FOR RESIDUE EDO A 1902
03
AC3
SOFTWARE
ASN A:1770 , LEU A:1772 , ASP A:1811 , LYS F:1487 , ASN F:1488
BINDING SITE FOR RESIDUE EDO A 1903
04
AC4
SOFTWARE
GLN A:1609 , ILE A:1822 , PRO A:1824 , VAL A:1825
BINDING SITE FOR RESIDUE EDO A 1904
05
AC5
SOFTWARE
TYR B:1692 , GLY B:1695 , ALA B:1696 , THR B:1741 , LEU B:1742 , PRO B:1744 , LEU B:1745 , MET B:1817
BINDING SITE FOR RESIDUE EDO B 1901
06
AC6
SOFTWARE
PRO B:1504 , TYR B:1509 , SER B:1557 , ARG B:1561 , GLY B:1677 , HOH B:2027
BINDING SITE FOR RESIDUE EDO B 1902
07
AC7
SOFTWARE
TYR C:1692 , GLY C:1695 , ALA C:1696 , THR C:1741 , PRO C:1744 , LEU C:1745 , MET C:1817 , HOH C:2042
BINDING SITE FOR RESIDUE EDO C 1901
08
AC8
SOFTWARE
PRO C:1504 , GLY C:1505 , SER C:1557 , ARG C:1561 , HIS C:1676 , GLY C:1677 , HOH C:2040
BINDING SITE FOR RESIDUE EDO C 1902
09
AC9
SOFTWARE
GLN C:1609 , ILE C:1822 , PRO C:1824 , VAL C:1825
BINDING SITE FOR RESIDUE EDO C 1903
10
BC1
SOFTWARE
GLY D:1695 , ALA D:1696 , THR D:1741 , LEU D:1745 , MET D:1817 , HOH D:2027
BINDING SITE FOR RESIDUE EDO D 1901
11
BC2
SOFTWARE
PRO D:1504 , GLY D:1505 , SER D:1557 , ARG D:1561 , HIS D:1676 , GLY D:1677 , HOH D:2004 , HOH D:2021
BINDING SITE FOR RESIDUE EDO D 1902
12
BC3
SOFTWARE
ILE D:1605 , GLN D:1609 , ILE D:1822 , PRO D:1824 , VAL D:1825
BINDING SITE FOR RESIDUE EDO D 1903
13
BC4
SOFTWARE
TYR E:1692 , GLY E:1695 , ALA E:1696 , THR E:1741 , PRO E:1744 , LEU E:1745 , MET E:1817
BINDING SITE FOR RESIDUE EDO E 1901
14
BC5
SOFTWARE
PRO E:1504 , GLY E:1505 , ARG E:1561 , GLY E:1677 , HOH E:2022
BINDING SITE FOR RESIDUE EDO E 1902
15
BC6
SOFTWARE
TYR F:1692 , GLY F:1695 , ALA F:1696 , THR F:1741 , PRO F:1744 , LEU F:1745 , MET F:1817
BINDING SITE FOR RESIDUE EDO F 1901
16
BC7
SOFTWARE
PRO F:1504 , SER F:1557 , ARG F:1561 , HIS F:1676 , GLY F:1677 , HOH F:2012
BINDING SITE FOR RESIDUE EDO F 1902
17
BC8
SOFTWARE
ILE F:1605 , GLN F:1609 , ILE F:1822 , PRO F:1824 , VAL F:1825
BINDING SITE FOR RESIDUE EDO F 1903
18
BC9
SOFTWARE
TYR G:1692 , GLY G:1695 , ALA G:1696 , THR G:1741 , PRO G:1744 , LEU G:1745 , MET G:1817 , HOH G:2039
BINDING SITE FOR RESIDUE EDO G 1901
19
CC1
SOFTWARE
PRO G:1504 , GLY G:1505 , SER G:1557 , ARG G:1561 , HIS G:1676 , GLY G:1677 , HOH G:2025
BINDING SITE FOR RESIDUE EDO G 1902
20
CC2
SOFTWARE
ASN G:1770 , LEU G:1772 , THR G:1773 , ARG G:1809 , ASP G:1811
BINDING SITE FOR RESIDUE EDO G 1903
21
CC3
SOFTWARE
TYR H:1692 , GLY H:1695 , ALA H:1696 , THR H:1741 , LEU H:1742 , PRO H:1744 , LEU H:1745 , MET H:1817
BINDING SITE FOR RESIDUE EDO H 1901
22
CC4
SOFTWARE
PRO H:1504 , GLY H:1505 , TYR H:1509 , ARG H:1561 , HIS H:1676 , GLY H:1677
BINDING SITE FOR RESIDUE EDO H 1902
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: DILUTE (A:1532-1808,B:1532-1808,C:1532-180...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DILUTE
PS51126
Dilute domain profile.
MYO5A_MOUSE
1532-1808
8
A:1532-1808
B:1532-1808
C:1532-1808
D:1532-1808
E:1532-1808
F:1532-1808
G:1532-1808
H:1532-1808
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
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Sidechain
Hetero
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (991 KB)
Header - Asym.Unit
Biol.Unit 1 (129 KB)
Header - Biol.Unit 1
Biol.Unit 2 (123 KB)
Header - Biol.Unit 2
Biol.Unit 3 (128 KB)
Header - Biol.Unit 3
Biol.Unit 4 (128 KB)
Header - Biol.Unit 4
Biol.Unit 5 (128 KB)
Header - Biol.Unit 5
Biol.Unit 6 (128 KB)
Header - Biol.Unit 6
Biol.Unit 7 (129 KB)
Header - Biol.Unit 7
Biol.Unit 8 (125 KB)
Header - Biol.Unit 8
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