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3W85
Asym. Unit
Info
Asym.Unit (117 KB)
Biol.Unit 1 (111 KB)
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(1)
Title
:
STRUCTURE OF TRYPANOSOMA CRUZI DIHYDROOROTATE DEHYDROGENASE IN COMPLEX WITH TT2-3-139
Authors
:
D. K. Inaoka, M. Iida, T. Tabuchi, N. Lee, S. Hashimoto, S. Matsuoka, T. K T. Shiba, K. Sakamoto, S. Suzuki, E. O. Balogun, T. Nara, T. Aoki, M. Ino T. Honma, A. Tanaka, S. Harada, K. Kita
Date
:
12 Mar 13 (Deposition) - 12 Mar 14 (Release) - 12 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Rossmann Fold, Oxidoreductase, Dihydroorotate/Orotate And Fumarate/Succinate Binding, Cytosol, Oxidoreductase-Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. K. Inaoka, M. Iida, T. Tabuchi, N. Lee, S. Hashimoto, S. Matsuoka, T. Kuranaga, T. Shiba, K. Sakamoto, S. Suzuki, E. O. Balogun, T. Nara, T. Aoki, M. Inoue, T. Honma, A. Tanaka, S. Harada, K. Kita
Structure Of Trypanosoma Cruzi Dihydroorotate Dehydrogenase In Complex With Tt2-3-139
To Be Published
[
close entry info
]
Hetero Components
(4, 14)
Info
All Hetero Components
1a: FLAVIN MONONUCLEOTIDE (FMNa)
1b: FLAVIN MONONUCLEOTIDE (FMNb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
3a: COBALT HEXAMMINE(III) (NCOa)
4a: 5-{2-[3-(METHOXYCARBONYL)PHENYL]ET... (W85a)
4b: 5-{2-[3-(METHOXYCARBONYL)PHENYL]ET... (W85b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FMN
2
Ligand/Ion
FLAVIN MONONUCLEOTIDE
2
GOL
9
Ligand/Ion
GLYCEROL
3
NCO
1
Ligand/Ion
COBALT HEXAMMINE(III)
4
W85
2
Ligand/Ion
5-{2-[3-(METHOXYCARBONYL)PHENYL]ETHYL}-2,6-DIOXO-1,2,3,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:43 , ARG A:50 , ASN A:67 , MET A:69 , GLY A:70 , LEU A:71 , ASN A:127 , PRO A:131 , ASN A:194 , SER A:195 , GOL A:405 , FMN A:410 , HOH A:690
BINDING SITE FOR RESIDUE W85 A 401
02
AC2
SOFTWARE
CYS A:31 , SER A:35 , PRO A:279 , HOH A:532 , CYS B:31 , SER B:35 , PRO B:279 , HOH B:638
BINDING SITE FOR RESIDUE GOL A 402
03
AC3
SOFTWARE
ARG A:238 , ARG A:239 , HOH A:588 , HOH A:665 , HOH A:695 , LYS B:214 , PHE B:217
BINDING SITE FOR RESIDUE GOL A 403
04
AC4
SOFTWARE
LYS A:214 , PHE A:217 , HOH A:549 , HOH A:721 , ILE B:171 , ARG B:238 , ARG B:239
BINDING SITE FOR RESIDUE GOL A 404
05
AC5
SOFTWARE
SER A:129 , GLN A:138 , PRO A:166 , PRO A:167 , ASN A:194 , SER A:195 , W85 A:401 , HOH A:522
BINDING SITE FOR RESIDUE GOL A 405
06
AC6
SOFTWARE
PHE A:61 , ASP A:203 , HOH A:631
BINDING SITE FOR RESIDUE GOL A 406
07
AC7
SOFTWARE
TYR A:237 , PRO A:241
BINDING SITE FOR RESIDUE GOL A 407
08
AC8
SOFTWARE
GLU A:205 , GLU A:207 , HOH A:722 , TYR B:298 , LYS B:309
BINDING SITE FOR RESIDUE GOL A 408
09
AC9
SOFTWARE
TYR A:58 , MET A:69 , GLN A:275 , HOH A:540 , HOH A:608
BINDING SITE FOR RESIDUE GOL A 409
10
BC1
SOFTWARE
ALA A:18 , ALA A:19 , GLY A:20 , LYS A:43 , SER A:44 , ASN A:67 , ASN A:127 , LYS A:164 , VAL A:193 , ASN A:194 , GLY A:221 , GLY A:222 , ILE A:225 , CYS A:248 , GLY A:249 , GLY A:250 , GLY A:271 , THR A:272 , W85 A:401 , HOH A:508 , HOH A:517 , HOH A:528 , HOH A:718
BINDING SITE FOR RESIDUE FMN A 410
11
BC2
SOFTWARE
GLN A:275 , GLU A:276 , GLY A:278 , HOH A:708 , GLN B:275 , GLU B:276 , GLY B:278
BINDING SITE FOR RESIDUE NCO A 411
12
BC3
SOFTWARE
LYS B:43 , ASN B:67 , MET B:69 , GLY B:70 , LEU B:71 , ASN B:127 , SER B:129 , CYS B:130 , PRO B:131 , GLN B:138 , ASN B:194 , SER B:195 , GOL B:402 , FMN B:403 , HOH B:681
BINDING SITE FOR RESIDUE W85 B 401
13
BC4
SOFTWARE
PRO B:166 , ASN B:194 , SER B:195 , GLY B:197 , GLY B:219 , W85 B:401 , HOH B:513
BINDING SITE FOR RESIDUE GOL B 402
14
BC5
SOFTWARE
ALA B:18 , ALA B:19 , GLY B:20 , LYS B:43 , SER B:44 , ASN B:67 , ASN B:127 , LYS B:164 , VAL B:193 , ASN B:194 , GLY B:221 , GLY B:222 , CYS B:248 , GLY B:249 , GLY B:250 , GLY B:271 , THR B:272 , W85 B:401 , HOH B:505 , HOH B:515 , HOH B:520
BINDING SITE FOR RESIDUE FMN B 403
[
close Site info
]
SAPs(SNPs)/Variants
(8, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PYRD_TRYCC_001 (M0T, chain A/B, )
2: VAR_PYRD_TRYCC_002 (C1R, chain A/B, )
3: VAR_PYRD_TRYCC_003 (F61V, chain A/B, )
4: VAR_PYRD_TRYCC_004 (S84I, chain A/B, )
5: VAR_PYRD_TRYCC_005 (L96V, chain A/B, )
6: VAR_PYRD_TRYCC_006 (L220I, chain A/B, )
7: VAR_PYRD_TRYCC_007 (T283R, chain A/B, )
8: VAR_PYRD_TRYCC_008 (R299K, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PYRD_TRYCC_001
*
M
2
T
PYRD_TRYCC
---
---
A/B
M
0
T
2
UniProt
VAR_PYRD_TRYCC_002
*
C
3
R
PYRD_TRYCC
---
---
A/B
C
1
R
3
UniProt
VAR_PYRD_TRYCC_003
*
F
63
V
PYRD_TRYCC
---
---
A/B
F
61
V
4
UniProt
VAR_PYRD_TRYCC_004
*
S
86
I
PYRD_TRYCC
---
---
A/B
S
84
I
5
UniProt
VAR_PYRD_TRYCC_005
*
L
98
V
PYRD_TRYCC
---
---
A/B
L
96
V
6
UniProt
VAR_PYRD_TRYCC_006
*
L
222
I
PYRD_TRYCC
---
---
A/B
L
220
I
7
UniProt
VAR_PYRD_TRYCC_007
*
T
285
R
PYRD_TRYCC
---
---
A/B
T
283
R
8
UniProt
VAR_PYRD_TRYCC_008
*
R
301
K
PYRD_TRYCC
---
---
A/B
R
299
K
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3w85a_ (A:)
1b: SCOP_d3w85b_ (B:)
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Classes
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(
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Folds
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(
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Superfamilies
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(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
FMN-linked oxidoreductases
(290)
Family
:
FMN-linked oxidoreductases
(242)
Protein domain
:
Dihydroorotate dehydrogenase
(90)
Trypanosoma cruzi [TaxId: 353153]
(49)
1a
d3w85a_
A:
1b
d3w85b_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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]
Atom Selection
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Nucleic
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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Asymmetric Unit 1
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