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3W7W
Biol. Unit 1
Info
Asym.Unit (268 KB)
Biol.Unit 1 (135 KB)
Biol.Unit 2 (134 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI YGJK E727A COMPLEXED WITH 2-O-ALPHA-D-GLUCOPYRANOSYL-ALPHA-D-GALACTOPYRANOSE
Authors
:
T. Miyazaki, M. Ichikawa, G. Yokoi, M. Kitaoka, H. Mori, Y. Kitano, A. Ni T. Tonozuka
Date
:
08 Mar 13 (Deposition) - 17 Jul 13 (Release) - 12 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Gh63, Processing Alpha-Glucosidase I, Alpha/Alpha Barrel, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
T. Miyazaki, M. Ichikawa, G. Yokoi, M. Kitaoka, H. Mori, Y. Kitano, A. Nishikawa, T. Tonozuka
Structure Of A Bacterial Glycoside Hydrolase Family 63 Enzyme In Complex With Its Glycosynthase Product, And Insights Into The Substrate Specificity.
Febs J. V. 280 4560 2013
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: ALPHA D-GALACTOSE (GLAa)
2b: ALPHA D-GALACTOSE (GLAb)
3a: ALPHA-D-GLUCOSE (GLCa)
3b: ALPHA-D-GLUCOSE (GLCb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
4g: MAGNESIUM ION (MGg)
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No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
GLA
1
Ligand/Ion
ALPHA D-GALACTOSE
3
GLC
1
Ligand/Ion
ALPHA-D-GLUCOSE
4
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:431 , ASN A:433 , ASN A:435 , VAL A:437 , GLU A:439 , GLU A:549
BINDING SITE FOR RESIDUE CA A 1001
2
AC2
SOFTWARE
HOH A:1198 , HOH A:1321 , HOH A:1341 , HOH A:1557 , HOH A:1558
BINDING SITE FOR RESIDUE MG A 1002
3
AC3
SOFTWARE
ASP A:501 , HOH A:1234 , HOH A:1308 , HOH A:1470 , HOH A:1555 , HOH A:1556
BINDING SITE FOR RESIDUE MG A 1003
4
AC4
SOFTWARE
HOH A:1147 , HOH A:1325 , HOH A:1509 , HOH A:1552 , HOH A:1553 , HOH A:1554
BINDING SITE FOR RESIDUE MG A 1004
5
AC5
SOFTWARE
GLU A:566 , HOH A:1205 , HOH A:1311 , HOH A:1396 , HOH A:1413 , HOH A:1546
BINDING SITE FOR RESIDUE MG A 1005
6
AC6
SOFTWARE
HOH A:1293 , HOH B:1070 , HOH B:1171 , HOH B:1233
BINDING SITE FOR RESIDUE MG B 801
7
BC1
SOFTWARE
TRP A:321 , TRP A:323 , ASP A:324 , ASP A:368 , LYS A:391 , GLY A:499 , ASP A:501 , TRP A:680 , PHE A:742 , TRP A:744 , HOH A:1135 , HOH A:1163 , HOH A:1183 , HOH A:1234 , HOH A:1296 , HOH A:1301
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 1006 TO 1007
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SAPs(SNPs)/Variants
(0, 0)
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SCOP Domains
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Asymmetric Unit 1
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Asym.Unit (268 KB)
Header - Asym.Unit
Biol.Unit 1 (135 KB)
Header - Biol.Unit 1
Biol.Unit 2 (134 KB)
Header - Biol.Unit 2
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