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3W7T
Asym. Unit
Info
Asym.Unit (287 KB)
Biol.Unit 1 (143 KB)
Biol.Unit 2 (144 KB)
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(1)
Title
:
ESCHERICHIA COLI K12 YGJK COMPLEXED WITH MANNOSE
Authors
:
T. Miyazaki, Y. Kurakata, A. Uechi, H. Yoshida, S. Kamitori, Y. Sakano, A. Nishikawa, T. Tonozuka
Date
:
06 Mar 13 (Deposition) - 03 Apr 13 (Release) - 03 Apr 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Gh63, Processing Alpha-Glucosidase I, Alpha/Alpha Barrel, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kurakata, A. Uechi, H. Yoshida, S. Kamitori, Y. Sakano, A. Nishikawa, T. Tonozuka
Structural Insights Into The Substrate Specificity And Function Of Escherichia Coli K12 Ygjk, A Glucosidase Belonging To The Glycoside Hydrolase Family 63.
J. Mol. Biol. V. 381 116 2008
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
7
Ligand/Ion
BETA-D-MANNOSE
2
CA
2
Ligand/Ion
CALCIUM ION
3
MG
2
Ligand/Ion
MAGNESIUM ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:431 , ASN A:433 , ASN A:435 , VAL A:437 , GLU A:439 , GLU A:549
BINDING SITE FOR RESIDUE CA A 1001
02
AC2
SOFTWARE
HOH A:1259 , HOH A:1313 , HOH A:1426 , HOH A:1458 , HOH A:1958 , HOH A:1959
BINDING SITE FOR RESIDUE MG A 1002
03
AC3
SOFTWARE
PRO A:308 , PHE A:315 , TRP A:321 , TRP A:323 , ASP A:324 , LYS A:391 , GLY A:499 , PHE A:742 , BMA A:1004 , HOH A:1138 , HOH A:1280 , HOH A:1306
BINDING SITE FOR RESIDUE BMA A 1003
04
AC4
SOFTWARE
TRP A:321 , ASP A:368 , ASN A:386 , LYS A:391 , BMA A:1003 , HOH A:1269 , HOH A:1397 , HOH A:1647
BINDING SITE FOR RESIDUE BMA A 1004
05
AC5
SOFTWARE
TRP A:77 , GLY A:80 , ASP A:132 , VAL A:134 , LYS A:215 , HOH A:1456 , HOH A:1490
BINDING SITE FOR RESIDUE BMA A 1005
06
AC6
SOFTWARE
ASP B:431 , ASN B:433 , ASN B:435 , VAL B:437 , GLU B:439 , GLU B:549
BINDING SITE FOR RESIDUE CA B 1001
07
AC7
SOFTWARE
HOH B:1247 , HOH B:1302 , HOH B:1332 , HOH B:1335 , HOH B:1608 , HOH B:1631
BINDING SITE FOR RESIDUE MG B 1002
08
AC8
SOFTWARE
PRO B:308 , PHE B:315 , TRP B:323 , ASP B:324 , LYS B:391 , GLY B:499 , PHE B:742 , BMA B:1004 , HOH B:1206 , HOH B:1264 , HOH B:1356
BINDING SITE FOR RESIDUE BMA B 1003
09
AC9
SOFTWARE
TRP B:321 , ASP B:368 , ASN B:386 , LYS B:391 , TRP B:496 , BMA B:1003 , HOH B:1242 , HOH B:1296 , HOH B:1383 , HOH B:1796
BINDING SITE FOR RESIDUE BMA B 1004
10
BC1
SOFTWARE
TRP B:77 , VAL B:134 , LYS B:215 , HOH B:1460 , HOH B:1607
BINDING SITE FOR RESIDUE BMA B 1005
11
BC2
SOFTWARE
ALA B:249 , ARG B:250 , PRO B:251 , ALA B:252 , PHE B:253 , HOH B:1384 , HOH B:1649 , HOH B:1696
BINDING SITE FOR RESIDUE BMA B 1006
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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;
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (287 KB)
Header - Asym.Unit
Biol.Unit 1 (143 KB)
Header - Biol.Unit 1
Biol.Unit 2 (144 KB)
Header - Biol.Unit 2
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