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3W7S
Asym. Unit
Info
Asym.Unit (284 KB)
Biol.Unit 1 (142 KB)
Biol.Unit 2 (142 KB)
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(1)
Title
:
ESCHERICHIA COLI K12 YGJK COMPLEXED WITH GLUCOSE
Authors
:
T. Miyazaki, Y. Kurakata, A. Uechi, H. Yoshida, S. Kamitori, Y. Sakano, A. Nishikawa, T. Tonozuka
Date
:
06 Mar 13 (Deposition) - 03 Apr 13 (Release) - 03 Apr 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Gh63, Processing Alpha-Glucosidase I, Alpha/Alpha Barrel, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kurakata, A. Uechi, H. Yoshida, S. Kamitori, Y. Sakano, A. Nishikawa, T. Tonozuka
Structural Insights Into The Substrate Specificity And Function Of Escherichia Coli K12 Ygjk, A Glucosidase Belonging To The Glycoside Hydrolase Family 63.
J. Mol. Biol. V. 381 116 2008
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Hetero Components
(2, 13)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: ALPHA-D-GLUCOSE (GLCa)
2b: ALPHA-D-GLUCOSE (GLCb)
2c: ALPHA-D-GLUCOSE (GLCc)
2d: ALPHA-D-GLUCOSE (GLCd)
2e: ALPHA-D-GLUCOSE (GLCe)
2f: ALPHA-D-GLUCOSE (GLCf)
2g: ALPHA-D-GLUCOSE (GLCg)
2h: ALPHA-D-GLUCOSE (GLCh)
2i: ALPHA-D-GLUCOSE (GLCi)
2j: ALPHA-D-GLUCOSE (GLCj)
2k: ALPHA-D-GLUCOSE (GLCk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
GLC
11
Ligand/Ion
ALPHA-D-GLUCOSE
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:431 , ASN A:433 , ASN A:435 , VAL A:437 , GLU A:439 , GLU A:549
BINDING SITE FOR RESIDUE CA A 1001
02
AC2
SOFTWARE
TRP A:321 , ASP A:368 , LYS A:391 , TRP A:496 , ASP A:501 , GLC A:1003 , HOH A:1325 , HOH A:1377 , HOH A:1431 , HOH A:1503 , HOH A:1746
BINDING SITE FOR RESIDUE GLC A 1002
03
AC3
SOFTWARE
GLY A:383 , ASN A:384 , TRP A:385 , ASN A:386 , ARG A:388 , TRP A:496 , GLC A:1002 , HOH A:1382 , HOH A:1436 , HOH A:1503 , HOH A:1616 , HOH A:1805
BINDING SITE FOR RESIDUE GLC A 1003
04
AC4
SOFTWARE
SER A:349 , TRP A:350 , GLN A:351 , ILE A:352 , GLN A:353 , ASP A:356 , ARG A:378 , HOH A:1174 , HOH A:1197 , HOH A:1511 , HOH A:1553 , HOH A:1631 , HOH A:1850
BINDING SITE FOR RESIDUE GLC A 1004
05
AC5
SOFTWARE
ASP A:3 , TYR A:90 , LYS A:99 , ARG A:112 , HOH A:1311 , HOH A:1771 , HOH A:1821
BINDING SITE FOR RESIDUE GLC A 1005
06
AC6
SOFTWARE
ASP A:338 , LYS A:341 , ARG A:345 , HOH A:1245 , HOH A:1529 , HOH A:1801 , HOH A:1873
BINDING SITE FOR RESIDUE GLC A 1006
07
AC7
SOFTWARE
ASP B:431 , ASN B:433 , ASN B:435 , VAL B:437 , GLU B:439 , GLU B:549
BINDING SITE FOR RESIDUE CA B 1001
08
AC8
SOFTWARE
TRP B:321 , ASP B:368 , LYS B:391 , TRP B:496 , ASP B:501 , GLC B:1006 , HOH B:1257 , HOH B:1477 , HOH B:1498 , HOH B:1669 , HOH B:1728 , HOH B:1828
BINDING SITE FOR RESIDUE GLC B 1002
09
AC9
SOFTWARE
ASN B:304 , ASP B:338 , LYS B:341 , ARG B:345 , HOH B:1475 , HOH B:1628 , HOH B:1898
BINDING SITE FOR RESIDUE GLC B 1003
10
BC1
SOFTWARE
SER B:349 , TRP B:350 , GLN B:351 , ILE B:352 , GLN B:353 , ASP B:356 , ARG B:378 , HOH B:1130 , HOH B:1282 , HOH B:1634 , HOH B:1758
BINDING SITE FOR RESIDUE GLC B 1004
11
BC2
SOFTWARE
ASP B:274 , ARG B:702 , ARG B:758 , HOH B:1658 , HOH B:1706 , HOH B:1860
BINDING SITE FOR RESIDUE GLC B 1005
12
BC3
SOFTWARE
LYS A:464 , GLY B:383 , ASN B:384 , TRP B:385 , ASN B:386 , ARG B:388 , GLC B:1002 , HOH B:1513 , HOH B:1723 , HOH B:1769 , HOH B:1828
BINDING SITE FOR RESIDUE GLC B 1006
13
BC4
SOFTWARE
TRP B:77 , GLY B:80 , ASP B:132 , VAL B:134 , HOH B:1252 , HOH B:1779
BINDING SITE FOR RESIDUE GLC B 1007
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (284 KB)
Header - Asym.Unit
Biol.Unit 1 (142 KB)
Header - Biol.Unit 1
Biol.Unit 2 (142 KB)
Header - Biol.Unit 2
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