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3W5U
Biol. Unit 2
Info
Asym.Unit (260 KB)
Biol.Unit 1 (67 KB)
Biol.Unit 2 (67 KB)
Biol.Unit 3 (68 KB)
Biol.Unit 4 (67 KB)
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(1)
Title
:
CROSS-LINKED COMPLEX BETWEEN FERREDOXIN AND FERREDOXIN-NADP+ REDUCTASE
Authors
:
Y. Kimata-Ariga, H. Kubota-Kawai, N. Muraki, T. Hase, G. Kurisu
Date
:
06 Feb 13 (Deposition) - 19 Jun 13 (Release) - 19 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Electron Transfer Complex, Electron Transport
(Keyword Search:
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Reference
:
Y. Kimata-Ariga, H. Kubota-Kawai, Y. -H. Lee, N. Muraki, T. Ikegami, G. Kurisu, T. Hase
Concentration-Dependent Oligomerization Of Cross-Linked Complexes Between Ferredoxin And Ferredoxin-Nadp(+) Reductase
Biochem. Biophys. Res. Commun. V. 434 867 2013
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
2a: FE2/S2 (INORGANIC) CLUSTER (FESa)
2b: FE2/S2 (INORGANIC) CLUSTER (FESb)
2c: FE2/S2 (INORGANIC) CLUSTER (FESc)
2d: FE2/S2 (INORGANIC) CLUSTER (FESd)
View:
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No.
Name
Count
Type
Full Name
1
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
FES
1
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:93 , LEU A:94 , TYR A:95 , SER A:96 , CYS A:114 , VAL A:115 , LYS A:116 , LEU A:118 , TYR A:120 , GLY A:130 , VAL A:131 , CYS A:132 , SER A:133 , THR A:172 , GLU A:312 , TYR A:314 , SER D:38
BINDING SITE FOR RESIDUE FAD A 401
2
AC3
SOFTWARE
SER B:38 , ARG C:93 , LEU C:94 , TYR C:95 , SER C:96 , CYS C:114 , VAL C:115 , LYS C:116 , LEU C:118 , TYR C:120 , GLY C:130 , VAL C:131 , CYS C:132 , SER C:133 , THR C:172 , TYR C:314 , HOH C:509
BINDING SITE FOR RESIDUE FAD C 401
3
AC4
SOFTWARE
SER D:38 , CYS D:39 , ARG D:40 , GLY D:42 , SER D:43 , CYS D:44 , CYS D:47 , LEU D:75 , CYS D:77
BINDING SITE FOR RESIDUE FES D 101
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: 2FE2S_FER_2 (D:3-93)
2: 2FE2S_FER_1 (D:39-47)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
2FE2S_FER_2
PS51085
2Fe-2S ferredoxin-type iron-sulfur binding domain profile.
FER1_MAIZE
55-145
1
-
D:3-93
-
-
2
2FE2S_FER_1
PS00197
2Fe-2S ferredoxin-type iron-sulfur binding region signature.
FER1_MAIZE
91-99
1
-
D:39-47
-
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d3w5ua1 (A:19-154)
1b: SCOP_d3w5uc1 (C:19-154)
1c: SCOP_d3w5ue1 (E:19-154)
1d: SCOP_d3w5ug1 (G:19-154)
2a: SCOP_d3w5ub_ (B:)
2b: SCOP_d3w5ud_ (D:)
2c: SCOP_d3w5uf_ (F:)
2d: SCOP_d3w5uh_ (H:)
3a: SCOP_d3w5ua2 (A:155-314)
3b: SCOP_d3w5uc2 (C:155-314)
3c: SCOP_d3w5ue2 (E:155-314)
3d: SCOP_d3w5ug2 (G:155-314)
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Classes
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Riboflavin synthase domain-like
(130)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Maize (Zea mays) [TaxId: 4577]
(5)
1a
d3w5ua1
A:19-154
1b
d3w5uc1
C:19-154
1c
d3w5ue1
E:19-154
1d
d3w5ug1
G:19-154
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
2Fe-2S ferredoxin-like
(174)
Family
:
2Fe-2S ferredoxin-related
(74)
Protein domain
:
2Fe-2S ferredoxin
(54)
Maize (Zea mays) [TaxId: 4577]
(3)
2a
d3w5ub_
B:
2b
d3w5ud_
D:
2c
d3w5uf_
F:
2d
d3w5uh_
H:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Superfamily
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Family
:
automated matches
(36)
Protein domain
:
automated matches
(36)
Maize (Zea mays) [TaxId: 4577]
(5)
3a
d3w5ua2
A:155-314
3b
d3w5uc2
C:155-314
3c
d3w5ue2
E:155-314
3d
d3w5ug2
G:155-314
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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