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3W5A
Asym. Unit
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Asym.Unit (330 KB)
Biol.Unit 1 (324 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CALCIUM PUMP AND SARCOLIPIN FROM RABBIT FAST TWITCH SKELETAL MUSCLE IN THE E1.MG2+ STATE
Authors
:
C. Toyoshima, S. Iwasawa, H. Ogawa, A. Hirata, J. Tsueda, G. Inesi
Date
:
27 Jan 13 (Deposition) - 06 Mar 13 (Release) - 27 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.01
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
P-Type Atpase, Hydrolase, Calcium Transport, Calcium Binding, Atp Binding, Endoplasmic Reticulum, Sarcolipin, Metal Transport-Membrane Protein Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
C. Toyoshima, S. Iwasawa, H. Ogawa, A. Hirata, J. Tsueda, G. Inesi
Crystal Structures Of The Calcium Pump And Sarcolipin In Th Mg2+-Bound E1 State.
Nature V. 495 260 2013
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Hetero Components
(5, 15)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
4a: PHOSPHATIDYLETHANOLAMINE (PTYa)
4b: PHOSPHATIDYLETHANOLAMINE (PTYb)
4c: PHOSPHATIDYLETHANOLAMINE (PTYc)
4d: PHOSPHATIDYLETHANOLAMINE (PTYd)
4e: PHOSPHATIDYLETHANOLAMINE (PTYe)
5a: 2',3'-O-[(1R)-2,4,6-TRINITROCYCLOH... (TM1a)
5b: 2',3'-O-[(1R)-2,4,6-TRINITROCYCLOH... (TM1b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
2
Mod. Amino Acid
ACETYL GROUP
2
MG
4
Ligand/Ion
MAGNESIUM ION
3
NA
2
Ligand/Ion
SODIUM ION
4
PTY
5
Ligand/Ion
PHOSPHATIDYLETHANOLAMINE
5
TM1
2
Ligand/Ion
2',3'-O-[(1R)-2,4,6-TRINITROCYCLOHEXA-2,5-DIENE-1,1-DIYL]ADENOSINE 5'-(DIHYDROGEN PHOSPHATE)
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:353 , PHE A:487 , ARG A:489 , LYS A:492 , MET A:494 , LYS A:515 , ARG A:560 , THR A:625 , GLY A:626 , ARG A:678 , VAL A:679 , GLU A:680 , HOH A:4006
BINDING SITE FOR RESIDUE TM1 A 1001
02
AC2
SOFTWARE
SER A:830 , GLY A:831 , TRP A:832 , PHE A:835 , LEU A:992
BINDING SITE FOR RESIDUE PTY A 1002
03
AC3
SOFTWARE
ARG A:989 , ASN A:990
BINDING SITE FOR RESIDUE PTY A 1003
04
AC4
SOFTWARE
ALA A:305 , ASN A:768 , GLU A:771 , ASN A:796 , ASP A:800 , HOH A:4001 , HOH A:4002
BINDING SITE FOR RESIDUE MG A 1004
05
AC5
SOFTWARE
HOH A:4003 , HOH A:4004 , HOH A:4005 , HOH A:4006
BINDING SITE FOR RESIDUE MG A 1005
06
AC6
SOFTWARE
LEU A:711 , LYS A:712 , ALA A:714 , GLU A:732
BINDING SITE FOR RESIDUE NA A 1006
07
AC7
SOFTWARE
THR B:353 , PHE B:487 , ARG B:489 , MET B:494 , LYS B:515 , ARG B:560 , GLY B:626 , ARG B:678 , VAL B:679 , MG B:1006
BINDING SITE FOR RESIDUE TM1 B 1001
08
AC8
SOFTWARE
SER B:830 , GLY B:831 , TRP B:832
BINDING SITE FOR RESIDUE PTY B 1002
09
AC9
SOFTWARE
MET B:923 , GLU B:982 , PHE B:986 , ARG B:989 , ASN B:990
BINDING SITE FOR RESIDUE PTY B 1003
10
BC1
SOFTWARE
ILE B:274 , PHE B:776 , ALA B:779 , ALA B:780 , PHE B:986
BINDING SITE FOR RESIDUE PTY B 1004
11
BC2
SOFTWARE
ALA B:305 , ASN B:768 , GLU B:771 , ASN B:796 , ASP B:800 , HOH B:4001 , HOH B:4002
BINDING SITE FOR RESIDUE MG B 1005
12
BC3
SOFTWARE
TM1 B:1001 , HOH B:4003 , HOH B:4004 , HOH B:4005 , HOH B:4006
BINDING SITE FOR RESIDUE MG B 1006
13
BC4
SOFTWARE
LEU B:711 , LYS B:712 , ALA B:714 , GLU B:732
BINDING SITE FOR RESIDUE NA B 1007
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ATPASE_E1_E2 (A:351-357,B:351-357)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATPASE_E1_E2
PS00154
E1-E2 ATPases phosphorylation site.
AT2A1_RABIT
351-357
2
A:351-357
B:351-357
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (330 KB)
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