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3W3S
Asym. Unit
Info
Asym.Unit (293 KB)
Biol.Unit 1 (563 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A. AEOLICUS TRNASEC IN COMPLEX WITH M. KANDLERI SERRS
Authors
:
Y. Itoh, S. Sekine, S. Yokoyama
Date
:
27 Dec 12 (Deposition) - 13 Feb 13 (Release) - 07 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Class 2 Aminoacyl-Trna Synthetase, Transfer Rna, Aminoacylation, Selenocysteine Incorporation, Selenium Metabolism, Ligase-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Itoh, S. Sekine, S. Suetsugu, S. Yokoyama
Tertiary Structure Of Bacterial Selenocysteine Trna
Nucleic Acids Res. V. 41 6729 2013
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Hetero Components
(5, 33)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
2a: PLATINUM (II) ION (PTa)
2b: PLATINUM (II) ION (PTb)
2c: PLATINUM (II) ION (PTc)
2d: PLATINUM (II) ION (PTd)
2e: PLATINUM (II) ION (PTe)
2f: PLATINUM (II) ION (PTf)
2g: PLATINUM (II) ION (PTg)
2h: PLATINUM (II) ION (PTh)
2i: PLATINUM (II) ION (PTi)
2j: PLATINUM (II) ION (PTj)
2k: PLATINUM (II) ION (PTk)
2l: PLATINUM (II) ION (PTl)
2m: PLATINUM (II) ION (PTm)
2n: PLATINUM (II) ION (PTn)
2o: PLATINUM (II) ION (PTo)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
4a: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOS... (SSAa)
5a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
2
PT
15
Ligand/Ion
PLATINUM (II) ION
3
SO4
8
Ligand/Ion
SULFATE ION
4
SSA
1
Ligand/Ion
5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE
5
ZN
1
Ligand/Ion
ZINC ION
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:319 , GLU A:368 , CYS A:478 , SSA A:2002
BINDING SITE FOR RESIDUE ZN A 2001
02
AC2
SOFTWARE
ALA A:317 , ARG A:349 , GLU A:351 , VAL A:361 , PHE A:364 , ARG A:366 , GLU A:368 , PHE A:409 , SER A:449 , VAL A:450 , GLY A:451 , SER A:452 , ASN A:454 , CYS A:478 , GLY A:482 , ARG A:485 , ZN A:2001
BINDING SITE FOR RESIDUE SSA A 2002
03
AC3
SOFTWARE
PHE A:364 , ARG A:485
BINDING SITE FOR RESIDUE PT A 2003
04
AC4
SOFTWARE
TYR A:410
BINDING SITE FOR RESIDUE PT A 2004
05
AC5
SOFTWARE
U B:47C
BINDING SITE FOR RESIDUE PT A 2006
06
AC6
SOFTWARE
HIS A:74
BINDING SITE FOR RESIDUE PT A 2007
07
AC7
SOFTWARE
ARG A:260 , HIS A:263 , LEU A:416
BINDING SITE FOR RESIDUE PT A 2009
08
AC8
SOFTWARE
GLU A:105 , GLU A:131 , ARG A:136
BINDING SITE FOR RESIDUE PT A 2010
09
AC9
SOFTWARE
GLY A:194
BINDING SITE FOR RESIDUE PT A 2012
10
BC1
SOFTWARE
ARG A:166 , SER A:167 , ARG A:414
BINDING SITE FOR RESIDUE PT A 2013
11
BC2
SOFTWARE
GLU A:144
BINDING SITE FOR RESIDUE PT A 2015
12
BC3
SOFTWARE
GLU A:511 , LYS A:512
BINDING SITE FOR RESIDUE PT A 2017
13
BC4
SOFTWARE
ARG A:40 , ARG A:83
BINDING SITE FOR RESIDUE SO4 A 2018
14
BC5
SOFTWARE
ARG A:40 , GLY A:41 , A B:47N , G B:47O
BINDING SITE FOR RESIDUE SO4 A 2019
15
BC6
SOFTWARE
MSE A:1 , PHE A:110 , ASP A:111 , ARG A:112 , GLU A:164
BINDING SITE FOR RESIDUE SO4 A 2020
16
BC7
SOFTWARE
ASN A:296 , GLU A:297
BINDING SITE FOR RESIDUE SO4 A 2021
17
BC8
SOFTWARE
ARG A:308 , ASP A:309
BINDING SITE FOR RESIDUE SO4 A 2022
18
BC9
SOFTWARE
ARG A:212 , ARG A:308
BINDING SITE FOR RESIDUE SO4 A 2023
19
CC1
SOFTWARE
G B:47B
BINDING SITE FOR RESIDUE SO4 B 101
20
CC2
SOFTWARE
C B:47D , C B:47E , C B:47F
BINDING SITE FOR RESIDUE SO4 B 102
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (293 KB)
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