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Asym. Unit
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Asym.Unit (120 KB)
Biol.Unit 1 (114 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SMOOTH MUSCLE G ACTIN DNASE I COMPLEX
Authors
:
N. Sakabe, K. Sakabe, K. Sasaki, H. Kondo, M. Shimomur
Date
:
20 Dec 12 (Deposition) - 30 Jan 13 (Release) - 30 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Smooth Muscle Actin, Actin, Dnase I, Structural Protein, G-Actin, Atp Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Sasaki, K. Sakabe, N. Sakabe, H. Kondo, M. Shimomur
Refined Structure And Solvent Network Of Chicken Gizzard G-Actin Dnase 1 Complex At 1. 8A Resolution
Acta Crystallogr. , Sect. A V. 49 C111 1993
(for further references see the
PDB file header
)
[
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]
Hetero Components
(6, 11)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
2c: BETA-D-MANNOSE (BMAc)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
4a: 4-METHYL-HISTIDINE (HICa)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
BMA
3
Ligand/Ion
BETA-D-MANNOSE
3
CA
2
Ligand/Ion
CALCIUM ION
4
HIC
1
Mod. Amino Acid
4-METHYL-HISTIDINE
5
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:12 , SER A:13 , GLY A:14 , LEU A:15 , LYS A:17 , GLY A:155 , ASP A:156 , GLY A:157 , VAL A:158 , GLY A:181 , LYS A:212 , GLU A:213 , GLY A:300 , GLY A:301 , THR A:302 , MET A:304 , TYR A:305 , LYS A:335 , CA A:402 , HOH A:501 , HOH A:506 , HOH A:514 , HOH A:632
BINDING SITE FOR RESIDUE ATP A 401
2
AC2
SOFTWARE
ATP A:401 , HOH A:501 , HOH A:502 , HOH A:503 , HOH A:514 , HOH A:632
BINDING SITE FOR RESIDUE CA A 402
3
AC3
SOFTWARE
ASP B:201 , THR B:203 , THR B:205 , THR B:207 , HOH B:408 , HOH B:409
BINDING SITE FOR RESIDUE CA B 308
4
AC4
SOFTWARE
ASP A:362 , GLU A:363 , ASN B:18 , SER B:242 , ALA B:248 , HOH B:461 , HOH B:473 , HOH B:479 , HOH B:480 , HOH B:491 , HOH B:493 , HOH B:522 , HOH B:537 , HOH B:549 , HOH B:567 , HOH B:570
BINDING SITE FOR LINKED RESIDUES B 301 to 307
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_DNAS1_BOVIN_001 (H121P, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_DNAS1_BOVIN_001
*
H
143
P
DNAS1_BOVIN
---
---
B
H
121
P
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(5, 5)
Info
All PROSITE Patterns/Profiles
1: ACTINS_1 (A:52-62)
2: ACTINS_ACT_LIKE (A:103-115)
3: DNASE_I_1 (B:130-150)
4: DNASE_I_2 (B:167-174)
5: ACTINS_2 (A:355-363)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_1
PS00406
Actins signature 1.
ACTH_CHICK
54-64
1
A:52-62
2
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTH_CHICK
105-117
1
A:103-115
3
DNASE_I_1
PS00919
Deoxyribonuclease I signature 1.
DNAS1_BOVIN
152-172
1
B:130-150
4
DNASE_I_2
PS00918
Deoxyribonuclease I signature 2.
DNAS1_BOVIN
189-196
1
B:167-174
5
ACTINS_2
PS00432
Actins signature 2.
ACTH_CHICK
357-365
1
A:355-363
[
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Exons
(8, 8)
Info
All Exons
Exon 1.2 (B:1-27)
Exon 1.3 (B:28-57)
Exon 1.4 (B:57-85)
Exon 1.5 (B:85-124)
Exon 1.6 (B:124-161)
Exon 1.7 (B:162-213)
Exon 1.8 (B:213-245)
Exon 1.9 (B:246-260)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/1.9
9: Boundary 1.9/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000026784
1
ENSBTAE00000293181
chr25:
3564711-3564829
119
DNAS1_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000026784
2
ENSBTAE00000218065
chr25:
3565156-3565303
148
DNAS1_BOVIN
1-49
49
1
B:1-27
27
1.3
ENSBTAT00000026784
3
ENSBTAE00000420413
chr25:
3565639-3565727
89
DNAS1_BOVIN
50-79
30
1
B:28-57
30
1.4
ENSBTAT00000026784
4
ENSBTAE00000410212
chr25:
3565904-3565987
84
DNAS1_BOVIN
79-107
29
1
B:57-85
29
1.5
ENSBTAT00000026784
5
ENSBTAE00000218074
chr25:
3566232-3566347
116
DNAS1_BOVIN
107-146
40
1
B:85-124
40
1.6
ENSBTAT00000026784
6
ENSBTAE00000407443
chr25:
3566499-3566611
113
DNAS1_BOVIN
146-183
38
1
B:124-161
38
1.7
ENSBTAT00000026784
7
ENSBTAE00000398022
chr25:
3566701-3566855
155
DNAS1_BOVIN
184-235
52
1
B:162-213
52
1.8
ENSBTAT00000026784
8
ENSBTAE00000425804
chr25:
3567129-3567225
97
DNAS1_BOVIN
235-267
33
1
B:213-245
33
1.9
ENSBTAT00000026784
9
ENSBTAE00000293180
chr25:
3567369-3567733
365
DNAS1_BOVIN
268-282
15
1
B:246-260
15
[
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]
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d3w3db_ (B:)
2a: SCOP_d3w3da2 (A:146-374)
3a: SCOP_d3w3da1 (A:1-145)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNase I-like
(70)
Superfamily
:
DNase I-like
(70)
Family
:
DNase I-like
(31)
Protein domain
:
Deoxyribonuclease I
(11)
Cow (Bos taurus) [TaxId: 9913]
(11)
1a
d3w3db_
B:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
automated matches
(47)
Chicken (Gallus gallus) [TaxId: 9031]
(1)
2a
d3w3da2
A:146-374
Family
:
automated matches
(111)
Protein domain
:
automated matches
(111)
Chicken (Gallus gallus) [TaxId: 9031]
(1)
3a
d3w3da1
A:1-145
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Nucleic
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Solvent
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