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3W0L
Biol. Unit 1
Info
Asym.Unit (325 KB)
Biol.Unit 1 (166 KB)
Biol.Unit 2 (159 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF XENOPUS GLUCOKINASE AND GLUCOKINASE REGULATORY PROTEIN COMPLEX
Authors
:
J. M. Choi, M. H. Seo, H. H. Kyeong, E. Kim, H. S. Kim
Date
:
31 Oct 12 (Deposition) - 17 Jul 13 (Release) - 17 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.92
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Aba Sandwich, Typical Hexokanse Fold, Kinase, Sugar Binding, Transferase-Transferase Inhibitor Complex
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. M. Choi, M. H. Seo, H. H. Kyeong, E. Kim, H. S. Kim
Molecular Basis For The Role Of Glucokinase Regulatory Protein As The Allosteric Switch For Glucokinase
Proc. Natl. Acad. Sci. Usa V. 110 10171 2013
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: FRUCTOSE -6-PHOSPHATE (F6Ra)
1b: FRUCTOSE -6-PHOSPHATE (F6Rb)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
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No.
Name
Count
Type
Full Name
1
F6R
1
Ligand/Ion
FRUCTOSE -6-PHOSPHATE
2
NA
-1
Ligand/Ion
SODIUM ION
3
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:220 , THR A:221 , GLY A:403 , SER A:404 , ARG A:440
BINDING SITE FOR RESIDUE SO4 A 501
2
AC2
SOFTWARE
MET A:231 , VAL A:234 , VAL A:237 , GLY A:239
BINDING SITE FOR RESIDUE NA A 502
3
AC3
SOFTWARE
CYS B:107 , GLY B:108 , THR B:109 , SER B:110 , GLU B:153 , SER B:179 , CYS B:180 , SER B:183 , SER B:258 , ARG B:259 , GLU B:347 , LYS B:513 , HOH B:811
BINDING SITE FOR RESIDUE F6R B 701
4
AC4
SOFTWARE
LEU B:80 , LYS B:81 , GLY B:84 , VAL B:286 , THR B:287 , GLU B:288 , LEU B:291
BINDING SITE FOR RESIDUE SO4 B 702
5
AC5
SOFTWARE
ARG B:89 , VAL B:93 , LEU B:202
BINDING SITE FOR RESIDUE SO4 B 703
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: SIS (B:90-281)
2: GCKR (B:250-267)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIS
PS51464
SIS domain profile.
GCKR_XENLA
90-283
319-498
2
B:90-281
-
B:319-498
-
2
GCKR
PS01272
Glucokinase regulatory protein family signature.
GCKR_XENLA
250-267
1
B:250-267
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3w0la1 (A:6-211)
1b: SCOP_d3w0la2 (A:212-454)
1c: SCOP_d3w0lc1 (C:6-211)
1d: SCOP_d3w0lc2 (C:212-455)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
automated matches
(111)
Protein domain
:
automated matches
(111)
African clawed frog (Xenopus laevis) [TaxId: 8355]
(1)
1a
d3w0la1
A:6-211
1b
d3w0la2
A:212-454
1c
d3w0lc1
C:6-211
1d
d3w0lc2
C:212-455
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (325 KB)
Header - Asym.Unit
Biol.Unit 1 (166 KB)
Header - Biol.Unit 1
Biol.Unit 2 (159 KB)
Header - Biol.Unit 2
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