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3VZS
Asym. Unit
Info
Asym.Unit (180 KB)
Biol.Unit 1 (172 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PHAB FROM RALSTONIA EUTROPHA IN COMPLEX WITH ACETOACETYL-COA AND NADP
Authors
:
K. Ikeda, Y. Tanaka, I. Tanaka, M. Yao
Date
:
15 Oct 12 (Deposition) - 28 Aug 13 (Release) - 18 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.14
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Alpha/Beta Fold, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Matsumoto, Y. Tanaka, T. Watanabe, R. Motohashi, K. Ikeda, K. Tobitani, M. Yao, I. Tanaka, S. Taguchi
Directed Evolution And Structural Analysis Of Nadph-Dependent Acetoacetyl Coenzyme A (Acetoacetyl-Coa) Reductase From Ralstonia Eutropha Reveals Two Mutations Responsible For Enhanced Kinetics
Appl. Environ. Microbiol. V. 79 6134 2013
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: ACETOACETYL-COENZYME A (CAAa)
1b: ACETOACETYL-COENZYME A (CAAb)
1c: ACETOACETYL-COENZYME A (CAAc)
1d: ACETOACETYL-COENZYME A (CAAd)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
2c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
2d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CAA
4
Ligand/Ion
ACETOACETYL-COENZYME A
2
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3
SO4
4
Ligand/Ion
SULFATE ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:14 , THR A:188 , ASP A:189 , MET A:190 , HOH A:511 , HOH A:512 , HOH A:520 , HOH A:529 , HOH A:544
BINDING SITE FOR RESIDUE SO4 A 301
02
AC2
SOFTWARE
GLY A:10 , CYS A:34 , GLY A:35 , ARG A:40 , GLY A:60 , ASN A:61 , VAL A:62 , ALA A:89 , GLY A:90 , ILE A:91 , THR A:92 , PRO A:183 , GLY A:184 , ILE A:186 , THR A:188 , MET A:190 , VAL A:191 , CAA A:303 , HOH A:424 , HOH A:458 , HOH A:471 , HOH A:507 , HOH A:509 , HOH A:511 , HOH A:512 , HOH A:515 , HOH A:519 , HOH A:524 , HOH A:532 , HOH A:544 , HOH A:575
BINDING SITE FOR RESIDUE NAP A 302
03
AC3
SOFTWARE
THR A:92 , ASP A:94 , SER A:140 , ASN A:142 , GLN A:147 , PHE A:148 , GLY A:149 , GLN A:150 , TYR A:153 , GLY A:184 , TYR A:185 , ARG A:195 , VAL A:198 , LYS A:201 , ILE A:202 , NAP A:302 , HOH A:516 , HOH A:526 , HOH A:541 , HOH A:556 , HOH A:572
BINDING SITE FOR RESIDUE CAA A 303
04
AC4
SOFTWARE
GLY B:14 , ARG B:40 , THR B:188 , ASP B:189 , MET B:190 , NAP B:302 , HOH B:508 , HOH B:523
BINDING SITE FOR RESIDUE SO4 B 301
05
AC5
SOFTWARE
GLY B:10 , ILE B:15 , CYS B:34 , GLY B:35 , ARG B:40 , GLY B:60 , ASN B:61 , VAL B:62 , ALA B:89 , GLY B:90 , ILE B:91 , THR B:92 , THR B:111 , SER B:139 , PRO B:183 , GLY B:184 , ILE B:186 , THR B:188 , MET B:190 , VAL B:191 , SO4 B:301 , CAA B:303 , HOH B:435 , HOH B:449 , HOH B:506 , HOH B:507 , HOH B:508 , HOH B:518 , HOH B:533 , HOH B:551 , HOH B:556
BINDING SITE FOR RESIDUE NAP B 302
06
AC6
SOFTWARE
THR B:92 , ASP B:94 , GLN B:147 , PHE B:148 , GLY B:149 , GLN B:150 , TYR B:153 , GLY B:184 , TYR B:185 , ARG B:195 , VAL B:198 , NAP B:302 , HOH B:506 , HOH B:513 , HOH B:517 , HOH B:527 , HOH B:555
BINDING SITE FOR RESIDUE CAA B 303
07
AC7
SOFTWARE
GLY C:13 , GLY C:14 , THR C:188 , ASP C:189 , MET C:190 , HOH C:504
BINDING SITE FOR RESIDUE SO4 C 301
08
AC8
SOFTWARE
GLY C:10 , ILE C:15 , GLY C:35 , ARG C:40 , GLY C:60 , ASN C:61 , VAL C:62 , ALA C:89 , GLY C:90 , ILE C:91 , THR C:92 , THR C:111 , SER C:139 , PRO C:183 , GLY C:184 , ILE C:186 , THR C:188 , MET C:190 , VAL C:191 , CAA C:303 , HOH C:440 , HOH C:499 , HOH C:540
BINDING SITE FOR RESIDUE NAP C 302
09
AC9
SOFTWARE
THR C:92 , ASP C:94 , SER C:140 , ASN C:142 , GLN C:147 , PHE C:148 , GLN C:150 , TYR C:153 , GLY C:184 , TYR C:185 , ARG C:195 , NAP C:302 , HOH C:521 , HOH C:525
BINDING SITE FOR RESIDUE CAA C 303
10
BC1
SOFTWARE
GLY D:13 , GLY D:14 , THR D:188 , ASP D:189 , MET D:190 , NAP D:302
BINDING SITE FOR RESIDUE SO4 D 301
11
BC2
SOFTWARE
GLY D:10 , ILE D:15 , CYS D:34 , GLY D:35 , ARG D:40 , GLY D:60 , ASN D:61 , VAL D:62 , ALA D:89 , GLY D:90 , ILE D:91 , THR D:92 , PRO D:183 , GLY D:184 , ILE D:186 , THR D:188 , MET D:190 , VAL D:191 , SO4 D:301 , CAA D:303 , HOH D:496 , HOH D:501 , HOH D:516
BINDING SITE FOR RESIDUE NAP D 302
12
BC3
SOFTWARE
THR D:92 , ASP D:94 , SER D:140 , GLN D:147 , PHE D:148 , GLN D:150 , TYR D:153 , GLY D:184 , TYR D:185 , MET D:190 , ARG D:195 , NAP D:302 , HOH D:510
BINDING SITE FOR RESIDUE CAA D 303
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:140-168,B:140-168,C:140-168,D:14...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
PHAB_CUPNH
140-168
4
A:140-168
B:140-168
C:140-168
D:140-168
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3vzsa_ (A:)
1b: SCOP_d3vzsb_ (B:)
1c: SCOP_d3vzsc_ (C:)
1d: SCOP_d3vzsd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Cupriavidus necator [TaxId: 381666]
(4)
1a
d3vzsa_
A:
1b
d3vzsb_
B:
1c
d3vzsc_
C:
1d
d3vzsd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Chain D
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
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Asym.Unit (180 KB)
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