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Asym. Unit
Info
Asym.Unit (172 KB)
Biol.Unit 1 (166 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PHAB FROM RALSTONIA EUTROPHA
Authors
:
K. Ikeda, Y. Tanaka, I. Tanaka, M. Yao
Date
:
15 Oct 12 (Deposition) - 28 Aug 13 (Release) - 18 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.79
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Alpha/Beta Structure, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Matsumoto, Y. Tanaka, T. Watanabe, R. Motohashi, K. Ikeda, K. Tobitani, M. Yao, I. Tanaka, S. Taguchi
Directed Evolution And Structural Analysis Of Nadph-Dependent Acetoacetyl Coenzyme A (Acetoacetyl-Coa) Reductase From Ralstonia Eutropha Reveals Two Mutations Responsible For Enhanced Kinetics
Appl. Environ. Microbiol. V. 79 6134 2013
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: 1,4-DIETHYLENE DIOXIDE (DIOa)
1b: 1,4-DIETHYLENE DIOXIDE (DIOb)
1c: 1,4-DIETHYLENE DIOXIDE (DIOc)
1d: 1,4-DIETHYLENE DIOXIDE (DIOd)
1e: 1,4-DIETHYLENE DIOXIDE (DIOe)
1f: 1,4-DIETHYLENE DIOXIDE (DIOf)
1g: 1,4-DIETHYLENE DIOXIDE (DIOg)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DIO
7
Ligand/Ion
1,4-DIETHYLENE DIOXIDE
2
GOL
2
Ligand/Ion
GLYCEROL
3
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:13 , GLY A:14 , THR A:188 , ASP A:189 , MET A:190 , HOH A:421
BINDING SITE FOR RESIDUE SO4 A 301
02
AC2
SOFTWARE
CYS A:34 , GLY A:35 , SER A:38 , ARG A:40
BINDING SITE FOR RESIDUE SO4 A 302
03
AC3
SOFTWARE
ARG A:210 , HOH A:444 , HOH A:531 , HOH A:582 , GLY C:175
BINDING SITE FOR RESIDUE SO4 A 303
04
AC4
SOFTWARE
THR A:101 , ARG A:102 , ASN B:37 , HOH B:532 , TRP D:65
BINDING SITE FOR RESIDUE GOL A 304
05
AC5
SOFTWARE
ASN A:142 , GLN A:150 , TYR A:185 , HOH A:507
BINDING SITE FOR RESIDUE DIO A 305
06
AC6
SOFTWARE
GLY B:14 , THR B:188 , ASP B:189 , MET B:190 , HOH B:409
BINDING SITE FOR RESIDUE SO4 B 301
07
AC7
SOFTWARE
CYS B:34 , GLY B:35 , SER B:38 , ARG B:40
BINDING SITE FOR RESIDUE SO4 B 302
08
AC8
SOFTWARE
ASN A:61 , ALA A:63 , ASP A:64 , ASP A:110 , ASP B:64 , HOH B:542
BINDING SITE FOR RESIDUE GOL B 303
09
AC9
SOFTWARE
ASN B:142 , GLN B:150 , MET B:190 , HOH B:421
BINDING SITE FOR RESIDUE DIO B 304
10
BC1
SOFTWARE
GLN B:3 , ARG B:4 , GLY B:27
BINDING SITE FOR RESIDUE DIO B 305
11
BC2
SOFTWARE
GLY C:13 , GLY C:14 , THR C:188 , ASP C:189 , MET C:190 , HOH C:548
BINDING SITE FOR RESIDUE SO4 C 301
12
BC3
SOFTWARE
ASN C:142 , GLN C:150 , TYR C:185 , HOH C:445 , HOH C:467
BINDING SITE FOR RESIDUE DIO C 302
13
BC4
SOFTWARE
ARG C:4 , GLY C:27 , PHE C:28
BINDING SITE FOR RESIDUE DIO C 303
14
BC5
SOFTWARE
GLY D:13 , GLY D:14 , THR D:188 , ASP D:189 , MET D:190
BINDING SITE FOR RESIDUE SO4 D 301
15
BC6
SOFTWARE
GLN D:3 , ARG D:4 , GLY D:27 , HOH D:529
BINDING SITE FOR RESIDUE DIO D 302
16
BC7
SOFTWARE
ASN D:142 , GLN D:150 , HOH D:420 , HOH D:454
BINDING SITE FOR RESIDUE DIO D 303
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:140-168,B:140-168,C:140-168,D:14...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
PHAB_CUPNH
140-168
4
A:140-168
B:140-168
C:140-168
D:140-168
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3vzpa_ (A:)
1b: SCOP_d3vzpb_ (B:)
1c: SCOP_d3vzpc_ (C:)
1d: SCOP_d3vzpd_ (D:)
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Protein Domains
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Cupriavidus necator [TaxId: 381666]
(4)
1a
d3vzpa_
A:
1b
d3vzpb_
B:
1c
d3vzpc_
C:
1d
d3vzpd_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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