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Biol.Unit 1 (36 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE BACILLUS CIRCULANS ENDO-BETA-(1,4)-XYLANASE (BCX) N35H MUTANT WITH GLU78 COVALENTLY BONDED TO 2-DEOXY-2-FLUORO-XYLOBIOSE
Authors
:
M. L. Ludwiczek, I. D'Angelo, G. N. Yalloway, M. Okon, J. E. Nielsen, N. C. Strynadka, S. G. Withers, L. P. Mcintosh
Date
:
15 Oct 12 (Deposition) - 08 May 13 (Release) - 31 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.73
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Xylanase, Gh-11 Glycoside Hydrolase, Glycosyl-Enzyme Intermediate, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. L. Ludwiczek, I. D'Angelo, G. N. Yalloway, J. A. Brockerman, M. Okon J. E. Nielsen, N. C. Strynadka, S. G. Withers, L. P. Mcintosh
Strategies For Modulating The Ph-Dependent Activity Of A Family 11 Glycoside Hydrolase
Biochemistry V. 52 3138 2013
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: 1,2-DEOXY-2-FLUORO-XYLOPYRANOSE (DFXa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
3a: BETA-D-XYLOPYRANOSE (XYPa)
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No.
Name
Count
Type
Full Name
1
DFX
1
Ligand/Ion
1,2-DEOXY-2-FLUORO-XYLOPYRANOSE
2
SO4
2
Ligand/Ion
SULFATE ION
3
XYP
1
Ligand/Ion
BETA-D-XYLOPYRANOSE
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Sites
(3, 3)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:22 , GLY A:23 , HOH A:370 , HOH A:375 , HOH A:461 , HOH A:478 , HOH A:530
BINDING SITE FOR RESIDUE SO4 A 203
2
AC2
SOFTWARE
THR A:111 , TYR A:113 , HOH A:558
BINDING SITE FOR RESIDUE SO4 A 204
3
AC3
SOFTWARE
GLN A:7 , TRP A:9 , VAL A:37 , TYR A:69 , TRP A:71 , GLU A:78 , TYR A:80 , ARG A:112 , PRO A:116 , SER A:117 , ILE A:118 , PHE A:125 , GLN A:127 , TYR A:166 , HOH A:441 , HOH A:448 , HOH A:493
BINDING SITE FOR LINKED RESIDUES A 201 to 202
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PROSITE Patterns/Profiles
(2, 2)
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1: GH11_1 (A:75-85)
2: GH11_2 (A:169-180)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GH11_1
PS00776
Glycosyl hydrolases family 11 (GH11) active site signature 1.
XYNA_BACCI
103-113
1
A:75-85
2
GH11_2
PS00777
Glycosyl hydrolases family 11 (GH11) active site signature 2.
XYNA_BACCI
197-208
1
A:169-180
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Exons
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SCOP Domains
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1a: SCOP_d3vzoa_ (A:)
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Class
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All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Xylanase/endoglucanase 11/12
(93)
Protein domain
:
Xylanase II
(65)
Bacillus circulans [TaxId: 1397]
(21)
1a
d3vzoa_
A:
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CATH Domains
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Asymmetric Unit 1
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