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3VXU
Biol. Unit 2
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Asym.Unit (274 KB)
Biol.Unit 1 (136 KB)
Biol.Unit 2 (138 KB)
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(1)
Title
:
THE COMPLEX BETWEEN T36-5 TCR AND HLA-A24 BOUND TO HIV-1 NEF134-10(2F) PEPTIDE
Authors
:
A. Shimizu, S. Fukai, A. Yamagata, A. Iwamoto
Date
:
20 Sep 12 (Deposition) - 23 Oct 13 (Release) - 20 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Keywords
:
Hiv-1, Nef, Immune System, Hla-A24, T Cell Receptor, Mhc Class I, Immunogloburin Domain, Tcr, Mhc, Immune Response
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Shimizu, A. Kawana-Tachikawa, A. Yamagata, C. Han, D. Zhu, Y. Sato, H. Nakamura, T. Koibuchi, J. Carlson, E. Martin, C. J. Brumme, Y. Shi, G. F. Gao, Z. L. Brumme, S. Fukai, A. Iwamoto
Structure Of Tcr And Antigen Complexes At An Immunodominant Ctl Epitope In Hiv-1 Infection
Sci Rep V. 3 3097 2013
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Hetero Components
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Sites
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SAPs(SNPs)/Variants
(12, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_004355 (H3Q, chain F, )
02: VAR_004356 (E62G, chain F, )
03: VAR_004357 (G65R, chain F, )
04: VAR_015765 (L95V, chain F, )
05: VAR_015766 (M97R, chain F, )
06: VAR_015767 (F99Y, chain F, )
07: VAR_015768 (G107W, chain F, )
08: VAR_015769 (Q156L, chain F, )
09: VAR_004358 (Q156W, chain F, )
10: VAR_015770 (T163R, chain F, )
11: VAR_056263 (R181H, chain F, )
12: VAR_004360 (T182A, chain F, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_004355
H
27
Q
1A24_HUMAN
Polymorphism
41541319
F
H
3
Q
02
UniProt
VAR_004356
E
86
G
1A24_HUMAN
Polymorphism
---
F
E
62
G
03
UniProt
VAR_004357
G
89
R
1A24_HUMAN
Polymorphism
---
F
G
65
R
04
UniProt
VAR_015765
L
119
V
1A24_HUMAN
Polymorphism
---
F
L
95
V
05
UniProt
VAR_015766
M
121
R
1A24_HUMAN
Polymorphism
---
F
M
97
R
06
UniProt
VAR_015767
F
123
Y
1A24_HUMAN
Polymorphism
---
F
F
99
Y
07
UniProt
VAR_015768
G
131
W
1A24_HUMAN
Polymorphism
---
F
G
107
W
08
UniProt
VAR_015769
Q
180
L
1A24_HUMAN
Polymorphism
---
F
Q
156
L
09
UniProt
VAR_004358
Q
180
W
1A24_HUMAN
Polymorphism
---
F
Q
156
W
10
UniProt
VAR_015770
T
187
R
1A24_HUMAN
Polymorphism
---
F
T
163
R
11
UniProt
VAR_056263
R
205
H
1A24_HUMAN
Polymorphism
17185861
F
R
181
H
12
UniProt
VAR_004360
T
206
A
1A24_HUMAN
Polymorphism
---
F
T
182
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
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1: IG_MHC (G:78-84)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
1
-
G:78-84
1A24_HUMAN
281-287
1
-
F:257-263
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (274 KB)
Header - Asym.Unit
Biol.Unit 1 (136 KB)
Header - Biol.Unit 1
Biol.Unit 2 (138 KB)
Header - Biol.Unit 2
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