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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
3VUY
Asym. Unit
Info
Asym.Unit (118 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (39 KB)
Biol.Unit 3 (38 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A20 ZF7 IN COMPLEX WITH LINEAR TETRAUBIQUITIN
Authors
:
H. Nishimasu, R. Ishitani, O. Nureki
Date
:
09 Jul 12 (Deposition) - 13 Feb 13 (Release) - 13 Feb 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D (1x)
Biol. Unit 2: C,F (1x)
Biol. Unit 3: B,E (1x)
Keywords
:
Zinc Finger, Protein Binding-Metal Binding Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Tokunaga, H. Nishimasu, R. Ishitani, E. Goto, T. Noguchi, K. Mio, K. Kamei, A. Ma, K. Iwai, O. Nureki
Specific Recognition Of Linear Polyubiquitin By A20 Zinc Finger 7 Is Involved In Nf-Kappab Regulation
Embo J. V. 31 3856 2012
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
1c: POTASSIUM ION (Kc)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
K
3
Ligand/Ion
POTASSIUM ION
2
ZN
3
Ligand/Ion
ZINC ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS D:762 , CYS D:767 , CYS D:779 , CYS D:782
BINDING SITE FOR RESIDUE ZN D 801
2
AC2
SOFTWARE
CYS D:762 , ALA D:764 , CYS D:767
BINDING SITE FOR RESIDUE K D 802
3
AC3
SOFTWARE
CYS F:762 , CYS F:767 , CYS F:779 , CYS F:782
BINDING SITE FOR RESIDUE ZN F 801
4
AC4
SOFTWARE
CYS F:762 , ALA F:764 , CYS F:767
BINDING SITE FOR RESIDUE K F 802
5
AC5
SOFTWARE
CYS E:762 , CYS E:767 , CYS E:779 , CYS E:782
BINDING SITE FOR RESIDUE ZN E 801
6
AC6
SOFTWARE
CYS E:762 , ALA E:764 , CYS E:767
BINDING SITE FOR RESIDUE K E 802
[
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SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_029319 (A766P, chain D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_029319
A
766
P
TNAP3_HUMAN
Polymorphism
5029957
D/E/F
A
766
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (-|-|-|-|-|-|-|-|A:1-76,B:1-76,C:1-...)
2: UBIQUITIN_1 (-|-|-|-|-|-|-|-|A:27-52,B:27-52,C:...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
UBC_HUMAN
1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
3
-
-
-
-
-
-
-
-
A:1-76
B:1-76
C:1-76
2
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
UBC_HUMAN
27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
3
-
-
-
-
-
-
-
-
A:27-52
B:27-52
C:27-52
[
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Exons
(2, 6)
Info
All Exons
Exon 1.10 (D:757-789 | E:759-790 | F:759-789)
Exon 2.2 (A:1-76 | B:1-76 | C:1-76)
View:
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All Exon Boundaries
1: Boundary 1.9/1.10
2: Boundary 1.10/-
3: Boundary 2.1/2.2
4: Boundary 2.2/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000237289
1c
ENSE00001013057
chr6:
138188581-138188631
51
TNAP3_HUMAN
-
0
0
-
-
1.3b
ENST00000237289
3b
ENSE00002202018
chr6:
138192350-138192659
310
TNAP3_HUMAN
1-99
99
0
-
-
1.4
ENST00000237289
4
ENSE00002197706
chr6:
138195982-138196172
191
TNAP3_HUMAN
99-162
64
0
-
-
1.5
ENST00000237289
5
ENSE00000764532
chr6:
138196825-138196972
148
TNAP3_HUMAN
163-212
50
0
-
-
1.6b
ENST00000237289
6b
ENSE00000764533
chr6:
138197133-138197303
171
TNAP3_HUMAN
212-269
58
0
-
-
1.7
ENST00000237289
7
ENSE00002165528
chr6:
138198213-138198393
181
TNAP3_HUMAN
269-329
61
0
-
-
1.8b
ENST00000237289
8b
ENSE00000764536
chr6:
138199569-138200488
920
TNAP3_HUMAN
329-636
308
0
-
-
1.9
ENST00000237289
9
ENSE00000764537
chr6:
138201208-138201389
182
TNAP3_HUMAN
636-696
61
0
-
-
1.10
ENST00000237289
10
ENSE00000798910
chr6:
138202172-138204449
2278
TNAP3_HUMAN
697-790
94
3
D:757-789
E:759-790
F:759-789
33
32
31
2.1
ENST00000339647
1
ENSE00001257182
chr12:
125399577-125399133
445
UBC_HUMAN
-
0
0
-
-
2.2
ENST00000339647
2
ENSE00001406973
chr12:
125398320-125396194
2127
UBC_HUMAN
1-686
686
3
A:1-76
B:1-76
C:1-76
76
76
76
[
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3vuya_ (A:)
1b: SCOP_d3vuyb_ (B:)
1c: SCOP_d3vuyc_ (C:)
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Classes
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)
(
)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
Ubiquitin
(162)
Human (Homo sapiens) [TaxId: 9606]
(121)
1a
d3vuya_
A:
1b
d3vuyb_
B:
1c
d3vuyc_
C:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (118 KB)
Header - Asym.Unit
Biol.Unit 1 (40 KB)
Header - Biol.Unit 1
Biol.Unit 2 (39 KB)
Header - Biol.Unit 2
Biol.Unit 3 (38 KB)
Header - Biol.Unit 3
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