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3VUA
Biol. Unit 7
Info
Asym.Unit (258 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (44 KB)
Biol.Unit 3 (48 KB)
Biol.Unit 4 (45 KB)
Biol.Unit 5 (44 KB)
Biol.Unit 6 (44 KB)
Biol.Unit 7 (251 KB)
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(1)
Title
:
APO ISDH-NEAT3 IN SPACE GROUP P3121 AT A RESOLUTION OF 1.85 A
Authors
:
N. T. Vu, J. M. M. Caaveiro, Y. Moriwaki, K. Tsumoto
Date
:
26 Jun 12 (Deposition) - 26 Jun 13 (Release) - 26 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: A,B,C,D,E,F (1x)
Keywords
:
Neat Domain, Heme Binding, Heme Transport, Apo Form, Cell Wall, Heme- Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. T. Vu, Y. Moriwaki, J. M. M. Caaveiro, K. Tsumoto
Structure Of Heme Transport Protein Isdh-Neat3 From S. Aureus In Complex With Indium-Porphyrin
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
GOL
6
Ligand/Ion
GLYCEROL
3
SO4
6
Ligand/Ion
SULFATE ION
[
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]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:546 , LEU A:547 , HOH A:828 , HOH A:898 , HOH A:903 , ASN C:639 , LYS E:609 , HOH E:893
BINDING SITE FOR RESIDUE SO4 A 701
02
AC2
SOFTWARE
VAL A:569 , GLU A:570 , HIS A:571 , LYS A:589 , HOH A:813 , HOH A:860 , HOH C:889 , LYS E:612
BINDING SITE FOR RESIDUE SO4 A 702
03
AC3
SOFTWARE
LYS A:609 , ASN A:639 , THR E:545 , ASP E:546 , LEU E:547
BINDING SITE FOR RESIDUE ACT A 703
04
AC4
SOFTWARE
ASP B:591 , LYS B:595 , ASP B:596 , LEU B:597 , VAL B:604 , ARG B:616 , LEU B:618 , HOH B:831
BINDING SITE FOR RESIDUE GOL B 701
05
AC5
SOFTWARE
GLU C:549 , ASP C:654 , HOH C:873 , TYR F:646
BINDING SITE FOR RESIDUE GOL C 701
06
AC6
SOFTWARE
TRP C:594 , ASP C:596 , LEU C:597 , VAL C:604 , ARG C:616 , HOH C:842
BINDING SITE FOR RESIDUE GOL C 702
07
AC7
SOFTWARE
ASP C:625 , LYS C:626 , ALA C:627
BINDING SITE FOR RESIDUE GOL C 703
08
AC8
SOFTWARE
GLU C:570 , HIS C:571 , LYS C:589 , LYS C:612 , HOH C:818 , HOH C:882 , LYS E:589 , HOH E:904
BINDING SITE FOR RESIDUE SO4 C 704
09
AC9
SOFTWARE
THR C:545 , LYS C:609 , ARG C:616
BINDING SITE FOR RESIDUE SO4 C 705
10
BC1
SOFTWARE
LYS C:587 , SER C:608 , LYS C:609 , ASP C:610 , SER C:615 , ARG C:616 , THR C:617 , HOH C:834
BINDING SITE FOR RESIDUE ACT C 706
11
BC2
SOFTWARE
ASP D:591 , TRP D:594 , ASP D:596 , LEU D:597 , VAL D:604 , ARG D:616
BINDING SITE FOR RESIDUE GOL D 701
12
BC3
SOFTWARE
TYR A:593 , ILE A:640 , TYR A:642 , VAL B:564 , TYR B:646 , GLN E:548 , GLU E:549 , HOH E:829 , HOH E:859
BINDING SITE FOR RESIDUE GOL E 701
13
BC4
SOFTWARE
LYS A:589 , LYS A:612 , HOH A:846 , GLU E:570 , HIS E:571 , LYS E:589 , HOH E:842
BINDING SITE FOR RESIDUE SO4 E 702
14
BC5
SOFTWARE
GLU F:570 , HIS F:571 , LYS F:589 , HOH F:830 , HOH F:836
BINDING SITE FOR RESIDUE SO4 F 701
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: NEAT (A:543-657,B:543-656,C:543-656,D:54...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NEAT
PS50978
NEAT domain profile.
ISDH_STAAM
105-232
345-471
543-660
6
-
-
A:543-657
B:543-656
C:543-656
D:543-656
E:543-655
F:543-655
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3vuaa_ (A:)
1b: SCOP_d3vuac_ (C:)
1c: SCOP_d3vuad_ (D:)
1d: SCOP_d3vuae_ (E:)
1e: SCOP_d3vuaf_ (F:)
1f: SCOP_d3vuab_ (B:)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
NEAT domain-like
(27)
Family
:
automated matches
(13)
Protein domain
:
automated matches
(13)
Staphylococcus aureus [TaxId: 158879]
(7)
1a
d3vuaa_
A:
1b
d3vuac_
C:
1c
d3vuad_
D:
1d
d3vuae_
E:
1e
d3vuaf_
F:
1f
d3vuab_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (258 KB)
Header - Asym.Unit
Biol.Unit 1 (45 KB)
Header - Biol.Unit 1
Biol.Unit 2 (44 KB)
Header - Biol.Unit 2
Biol.Unit 3 (48 KB)
Header - Biol.Unit 3
Biol.Unit 4 (45 KB)
Header - Biol.Unit 4
Biol.Unit 5 (44 KB)
Header - Biol.Unit 5
Biol.Unit 6 (44 KB)
Header - Biol.Unit 6
Biol.Unit 7 (251 KB)
Header - Biol.Unit 7
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