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Getting 'Exon' information from database.
3VSO
Asym. Unit
Info
Asym.Unit (93 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (89 KB)
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(1)
Title
:
HUMAN PPAR GAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH A GAMMA SELECTIVE AGONIST MEKT21
Authors
:
T. Oyama, T. Waku, M. Ohashi, K. Morikawa, H. Miyachi
Date
:
30 Apr 12 (Deposition) - 01 May 13 (Release) - 01 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Mainly Alpha, Nuclear Receptor, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ohashi, T. Oyama, E. W. Putranto, T. Waku, H. Nobusada, K. Kataoka, K. Matsuno, M. Yashiro, K. Morikawa, N. H. Huh, H. Miyachi
Design And Synthesis Of A Series Of Alpha-Benzyl Phenylpropanoic Acid-Type Peroxisome Proliferator-Activated Receptor (Ppar) Gamma Partial Agonists With Improved Aqueou Solubility
Bioorg. Med. Chem. V. 21 2319 2013
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: (2R)-2-BENZYL-3-[4-PROPOXY-3-({[4-... (EK1a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EK1
1
Ligand/Ion
(2R)-2-BENZYL-3-[4-PROPOXY-3-({[4-(PYRIMIDIN-2-YL)BENZOYL]AMINO}METHYL)PHENYL]PROPANOIC ACID
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:264 , PHE A:282 , GLY A:284 , CYS A:285 , GLN A:286 , ARG A:288 , SER A:289 , HIS A:323 , TYR A:327 , MET A:348 , MET A:364 , HIS A:449 , LEU A:453 , LEU A:469 , TYR A:473 , HOH A:635
BINDING SITE FOR RESIDUE EK1 A 501
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SAPs(SNPs)/Variants
(6, 12)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_010725 (Q286P, chain A/B, )
2: VAR_010726 (R288H, chain A/B, )
3: VAR_010727 (V290M, chain A/B, )
4: VAR_022700 (F360L, chain A/B, )
5: VAR_022701 (R397C, chain A/B, )
6: VAR_010728 (P467L, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_010725
Q
314
P
PPARG_HUMAN
Unclassified
28936407
A/B
Q
286
P
2
UniProt
VAR_010726
R
316
H
PPARG_HUMAN
Unclassified
28936407
A/B
R
288
H
3
UniProt
VAR_010727
V
318
M
PPARG_HUMAN
Unclassified
---
A/B
V
290
M
4
UniProt
VAR_022700
F
388
L
PPARG_HUMAN
Disease (FPLD3)
---
A/B
F
360
L
5
UniProt
VAR_022701
R
425
C
PPARG_HUMAN
Disease (FPLD3)
---
A/B
R
397
C
6
UniProt
VAR_010728
P
495
L
PPARG_HUMAN
Unclassified
---
A/B
P
467
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(3, 6)
Info
All Exons
Exon 1.12a (A:205-245 | B:207-245 (gaps))
Exon 1.13 (A:246-396 (gaps) | B:246-396 (gaps...)
Exon 1.14e (A:396-476 | B:396-473)
View:
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All Exon Boundaries
1: Boundary 1.10/1.12a
2: Boundary 1.12a/1.13
3: Boundary 1.13/1.14e
4: Boundary 1.14e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.6a
ENST00000287820
6a
ENSE00002160702
chr3:
12392971-12393173
203
PPARG_HUMAN
1-28
28
0
-
-
1.8b
ENST00000287820
8b
ENSE00001774542
chr3:
12421203-12421430
228
PPARG_HUMAN
28-104
77
0
-
-
1.9b
ENST00000287820
9b
ENSE00001762865
chr3:
12422821-12422990
170
PPARG_HUMAN
104-160
57
0
-
-
1.10
ENST00000287820
10
ENSE00001798725
chr3:
12434113-12434251
139
PPARG_HUMAN
161-207
47
0
-
-
1.12a
ENST00000287820
12a
ENSE00001804058
chr3:
12447381-12447580
200
PPARG_HUMAN
207-273
67
2
A:205-245
B:207-245 (gaps)
41
39
1.13
ENST00000287820
13
ENSE00001676214
chr3:
12458203-12458653
451
PPARG_HUMAN
274-424
151
2
A:246-396 (gaps)
B:246-396 (gaps)
151
151
1.14e
ENST00000287820
14e
ENSE00001527068
chr3:
12475397-12475855
459
PPARG_HUMAN
424-505
82
2
A:396-476
B:396-473
81
78
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3vsoa_ (A:)
1b: SCOP_d3vsob_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Peroxisome proliferator activated receptor gamma, PPAR-gamma
(83)
Human (Homo sapiens) [TaxId: 9606]
(83)
1a
d3vsoa_
A:
1b
d3vsob_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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