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3VRC
Asym. Unit
Info
Asym.Unit (113 KB)
Biol.Unit 1 (107 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CYTOCHROME C' FROM THERMOCHROMATIUM TEPIDUM
Authors
:
Y. Hirano, Y. Kimura, H. Suzuki, K. Miki, Z. -Y. Wang
Date
:
09 Apr 12 (Deposition) - 12 Sep 12 (Release) - 12 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
C-Type Cytpchrome, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Hirano, Y. Kimura, H. Suzuki, K. Miki, Z. -Y. Wang
Structure Analysis And Comparative Characterization Of The Cytochrome C' And Flavocytochrome C From Thermophilic Purpl Photosynthetic Bacterium Thermochromatium Tepidum
Biochemistry V. 51 6556 2012
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Hetero Components
(5, 14)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
2a: CHLORIDE ION (CLa)
3a: HEME C (HECa)
3b: HEME C (HECb)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
5a: TETRAETHYLENE GLYCOL (PG4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
9
Ligand/Ion
CADMIUM ION
2
CL
1
Ligand/Ion
CHLORIDE ION
3
HEC
2
Ligand/Ion
HEME C
4
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:12 , GLN A:13 , TYR A:16 , MET A:19 , TYR A:58 , THR A:71 , ARG A:72 , LEU A:77 , VAL A:84 , ALA A:88 , CYS A:121 , CYS A:124 , HIS A:125 , ARG A:129 , HOH A:302 , HOH A:390 , HOH A:471 , GLU B:106 , ASN B:108 , CD B:202 , HOH B:302 , HOH B:380 , HOH B:424 , HOH B:518 , HOH B:529
BINDING SITE FOR RESIDUE HEC A 200
02
AC2
SOFTWARE
GLU A:82 , CL A:206 , GLU B:76
BINDING SITE FOR RESIDUE CD A 201
03
AC3
SOFTWARE
ASP A:131 , HOH A:319 , HOH A:320 , HOH A:325 , HOH A:371 , HOH A:501
BINDING SITE FOR RESIDUE CD A 202
04
AC4
SOFTWARE
ASP A:116 , HOH A:337 , HOH A:402 , HOH A:502
BINDING SITE FOR RESIDUE CD A 203
05
AC5
SOFTWARE
GLU A:76 , HOH A:382 , HOH A:457
BINDING SITE FOR RESIDUE CD A 204
06
AC6
SOFTWARE
GLU A:7 , HOH A:486 , HOH A:499
BINDING SITE FOR RESIDUE CD A 205
07
AC7
SOFTWARE
CD A:201 , HOH A:460 , PRO B:75 , GLU B:76
BINDING SITE FOR RESIDUE CL A 206
08
AC8
SOFTWARE
GLU A:82 , ASP A:83 , ARG A:89 , HOH A:379 , HOH A:436 , GLN B:79 , HOH B:349
BINDING SITE FOR RESIDUE PEG A 207
09
AC9
SOFTWARE
TYR A:58 , GLY A:59 , PRO A:60 , GLY A:61 , ASP A:63 , LYS A:64 , PHE A:78 , LEU A:81 , HOH A:514 , HOH A:515
BINDING SITE FOR RESIDUE PG4 A 208
10
BC1
SOFTWARE
ARG B:12 , GLN B:13 , TYR B:16 , ALA B:17 , TYR B:58 , THR B:71 , ARG B:72 , LEU B:77 , VAL B:84 , ALA B:88 , LEU B:91 , CYS B:121 , CYS B:124 , HIS B:125 , ARG B:129 , HOH B:304
BINDING SITE FOR RESIDUE HEC B 201
11
BC2
SOFTWARE
HEC A:200 , ASN B:108 , HOH B:302 , HOH B:311 , HOH B:424 , HOH B:518
BINDING SITE FOR RESIDUE CD B 202
12
BC3
SOFTWARE
ASP B:37 , HOH B:435 , HOH B:523 , HOH B:542
BINDING SITE FOR RESIDUE CD B 203
13
BC4
SOFTWARE
ASP B:131 , HOH B:344 , HOH B:378 , HOH B:379 , HOH B:473 , HOH B:537
BINDING SITE FOR RESIDUE CD B 204
14
BC5
SOFTWARE
ASP B:63 , HOH B:437 , HOH B:474
BINDING SITE FOR RESIDUE CD B 205
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3vrca_ (A:)
1b: SCOP_d3vrcb_ (B:)
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Classes
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(
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
Cytochromes
(82)
Family
:
Cytochrome c'-like
(44)
Protein domain
:
automated matches
(27)
Thermochromatium tepidum [TaxId: 1050]
(1)
1a
d3vrca_
A:
1b
d3vrcb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (113 KB)
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