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3VRB
Biol. Unit 1
Info
Asym.Unit (379 KB)
Biol.Unit 1 (189 KB)
Biol.Unit 2 (187 KB)
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(1)
Title
:
MITOCHONDRIAL RHODOQUINOL-FUMARATE REDUCTASE FROM THE PARASITIC NEMATODE ASCARIS SUUM WITH THE SPECIFIC INHIBITOR FLUTOLANIL AND SUBSTRATE FUMARATE
Authors
:
H. Shimizu, T. Shiba, D. K. Inaoka, A. Osanai, K. Kita, K. Sakamoto, S. Ha
Date
:
07 Apr 12 (Deposition) - 11 Jul 12 (Release) - 03 Jun 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.91
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Ascaris Suum, Membrane Protein, Reductase, Mitochondrial Membrane, Oxidoreductase-Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
H. Shimizu, A. Osanai, K. Sakamoto, D. K. Inaoka, T. Shiba, S. Harada, K. Kita
Crystal Structure Of Mitochondrial Quinol-Fumarate Reductas From The Parasitic Nematode Ascaris Suum
J. Biochem. V. 151 589 2012
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Hetero Components
(8, 8)
Info
All Hetero Components
1a: L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-G... (EPHa)
1b: L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-G... (EPHb)
2a: FE3-S4 CLUSTER (F3Sa)
2b: FE3-S4 CLUSTER (F3Sb)
3a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
4a: FE2/S2 (INORGANIC) CLUSTER (FESa)
4b: FE2/S2 (INORGANIC) CLUSTER (FESb)
5a: N-[3-(1-METHYLETHOXY)PHENYL]-2-(TR... (FTNa)
5b: N-[3-(1-METHYLETHOXY)PHENYL]-2-(TR... (FTNb)
6a: FUMARIC ACID (FUMa)
6b: FUMARIC ACID (FUMb)
7a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
7b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
8a: IRON/SULFUR CLUSTER (SF4a)
8b: IRON/SULFUR CLUSTER (SF4b)
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No.
Name
Count
Type
Full Name
1
EPH
1
Ligand/Ion
L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE
2
F3S
1
Ligand/Ion
FE3-S4 CLUSTER
3
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
4
FES
1
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
5
FTN
1
Ligand/Ion
N-[3-(1-METHYLETHOXY)PHENYL]-2-(TRIFLUOROMETHYL)BENZAMIDE
6
FUM
1
Ligand/Ion
FUMARIC ACID
7
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
8
SF4
1
Ligand/Ion
IRON/SULFUR CLUSTER
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:85 , HIS A:276 , THR A:288 , GLU A:289 , ARG A:320 , HIS A:387 , ARG A:432 , ALA A:435 , FAD A:702
BINDING SITE FOR RESIDUE FUM A 701
2
AC2
SOFTWARE
GLY A:48 , ALA A:49 , GLY A:50 , GLY A:51 , ALA A:52 , THR A:71 , LYS A:72 , MET A:73 , SER A:78 , HIS A:79 , THR A:80 , ALA A:83 , GLN A:84 , GLY A:85 , GLY A:86 , TYR A:199 , ALA A:201 , ALA A:235 , THR A:236 , GLY A:237 , THR A:247 , ASP A:255 , LEU A:286 , HIS A:387 , TYR A:388 , GLY A:420 , GLU A:421 , ARG A:432 , ALA A:435 , ASN A:436 , SER A:437 , LEU A:438 , FUM A:701
BINDING SITE FOR RESIDUE FAD A 702
3
AC3
SOFTWARE
SER B:88 , CYS B:89 , ILE B:93 , CYS B:94 , GLY B:95 , CYS B:97 , CYS B:109
BINDING SITE FOR RESIDUE FES B 301
4
AC4
SOFTWARE
CYS B:182 , ILE B:183 , LEU B:184 , CYS B:185 , ALA B:186 , CYS B:187 , CYS B:188 , CYS B:249 , LEU B:253
BINDING SITE FOR RESIDUE SF4 B 302
5
AC5
SOFTWARE
CYS B:192 , TYR B:202 , CYS B:239 , HIS B:240 , THR B:241 , ILE B:242 , MET B:243 , CYS B:245
BINDING SITE FOR RESIDUE F3S B 303
6
AC6
SOFTWARE
HIS B:240 , HIS C:75 , ARG C:76 , GLY C:79 , MET C:82 , HIS C:131 , THR C:132 , ARG D:63 , ALA D:66 , MET D:69 , VAL D:70 , HIS D:95
BINDING SITE FOR RESIDUE HEM C 201
7
AC7
SOFTWARE
PRO B:193 , SER B:194 , TRP B:197 , HIS B:240 , TRP C:69 , SER C:72 , ARG C:76 , ASP D:106 , TYR D:107
BINDING SITE FOR RESIDUE FTN C 202
8
AC8
SOFTWARE
MET C:82 , THR C:85 , PRO C:127 , LEU C:133 , VAL C:170 , ALA D:76 , TYR D:77 , HIS D:80 , PHE D:150 , GLU D:151 , TRP D:154
BINDING SITE FOR RESIDUE EPH D 201
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3vrbb2 (B:139-281)
1b: SCOP_d3vrbf2 (F:139-281)
2a: SCOP_d3vrbb1 (B:33-138)
2b: SCOP_d3vrbf1 (F:33-138)
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Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
alpha-helical ferredoxin
(43)
Family
:
automated matches
(3)
Protein domain
:
automated matches
(3)
Pig roundworm (Ascaris suum) [TaxId: 6253]
(3)
1a
d3vrbb2
B:139-281
1b
d3vrbf2
F:139-281
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
2Fe-2S ferredoxin-like
(174)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Pig roundworm (Ascaris suum) [TaxId: 6253]
(3)
2a
d3vrbb1
B:33-138
2b
d3vrbf1
F:33-138
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (379 KB)
Header - Asym.Unit
Biol.Unit 1 (189 KB)
Header - Biol.Unit 1
Biol.Unit 2 (187 KB)
Header - Biol.Unit 2
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